View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_8 (Length: 446)
Name: NF9656_low_8
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 59 - 429
Target Start/End: Original strand, 31820007 - 31820376
Alignment:
| Q |
59 |
tcatttagtgaagcattcacatctgatcagagaccttttagtttgaattcgcagatggtaacttcaaatgcactagcttttcaacaaatgtggttttctc |
158 |
Q |
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| T |
31820007 |
tcatttagtgaagcattcacgtctgatcagagaccttttagtttgaattcgcagatggtaacttcaaatgcactagcttttcaacaaatgtggttttctc |
31820106 |
T |
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| Q |
159 |
aaaatgttacctttaacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttgacaacaattttttatgtgatggagaa |
258 |
Q |
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| T |
31820107 |
aaaatgttacctttaacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttgacaacaattttttatgtgatggagaa |
31820206 |
T |
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| Q |
259 |
acataagattgatgtcatacatgccaacatcttgtgcaataataatggaaagagctgcatgatccaagcccatgtaagtttcaaattcaattcccacttt |
358 |
Q |
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| T |
31820207 |
acataagattgatgtcatacatgccaacatcttgtgcaataataatgcaaagagctgcatgatccaagcccatgtaagtttcaaattcaattcccacttt |
31820306 |
T |
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| Q |
359 |
atcgtgcattttgttttcttatattataccagcacttgtggagtaatttagaggaatctacgtgaatttca |
429 |
Q |
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| T |
31820307 |
atcgtgcattttgttttcttatattataccagcacttgtggagtaatttaga-gaatctaagggaatttca |
31820376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 343
Target Start/End: Original strand, 33485659 - 33485853
Alignment:
| Q |
149 |
tggttttctcaaaatgttacctttaacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttgacaacaattttttatg |
248 |
Q |
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| T |
33485659 |
tggtcttctcaaaatgttgtgttgaacatatgtggtggtgaagcacaattttgcatttgttcaactaagaagcctggtctcttgaccacaattgctttgg |
33485758 |
T |
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| Q |
249 |
tgatggagaaacataagattgatgtcatacatgccaacatcttgtgcaataataatggaaagagctgcatgatccaagcccatgtaagtttcaaa |
343 |
Q |
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| T |
33485759 |
tgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
33485853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 343
Target Start/End: Original strand, 33498870 - 33499064
Alignment:
| Q |
149 |
tggttttctcaaaatgttacctttaacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttgacaacaattttttatg |
248 |
Q |
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| T |
33498870 |
tggtcttctcaaaatgttgtgttgaacatatgtggtggtgaagcacaattttgcatttgttcaactaagaagcctggtctcttgaccacaattgctttgg |
33498969 |
T |
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| Q |
249 |
tgatggagaaacataagattgatgtcatacatgccaacatcttgtgcaataataatggaaagagctgcatgatccaagcccatgtaagtttcaaa |
343 |
Q |
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| T |
33498970 |
tgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
33499064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 134 - 336
Target Start/End: Complemental strand, 12079498 - 12079296
Alignment:
| Q |
134 |
gcttttcaacaaatgtggttttctcaaaatgttacctttaacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttga |
233 |
Q |
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|||||| | ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| || | |||||| |
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| T |
12079498 |
gcttttgatcaaatgttgttttctctaaatgttacctttagtgtttgcggagatgaagcacaattttgcatatactcaaccaagagaccagacatgttga |
12079399 |
T |
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| Q |
234 |
caacaattttttatgtgatggagaaacataagattgatgtcatacatg-ccaacatcttgtgcaataataatggaaagagctgcatgatccaagcccatg |
332 |
Q |
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||||| |||||||| |||||||||||||||||||| |||||| ||| ||||||||||| ||||| ||||||| || ||||||||||| |||||||||| |
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| T |
12079398 |
tcacaatcttttatgtaatggagaaacataagattgaagtcatatatgtccaacatcttgcgcaatgataatgg-aacagctgcatgattcaagcccatg |
12079300 |
T |
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| Q |
333 |
taag |
336 |
Q |
| |
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|||| |
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| T |
12079299 |
taag |
12079296 |
T |
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