View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_80 (Length: 242)
Name: NF9656_low_80
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 7669490 - 7669721
Alignment:
| Q |
1 |
gccctttctctcttgataaaacactgaattggattgtctcttggacaaggctgaaaaacaaaataaaagacaaagtaataacacatttagtaccatacac |
100 |
Q |
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| T |
7669490 |
gccctttctctcttgataaaacactgaattggattgtctcttggacaaggctgaaaaacaaaataaaagacaaagtaataacacatttagtaccatacac |
7669589 |
T |
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| Q |
101 |
catgtgcttccaagcttgaaacaaaaatgtcatcaaattaaatgcataaagataaagaaaaaattacctgcttcaatgatatagggaaagtgatccaacc |
200 |
Q |
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| T |
7669590 |
catgtgcttccaagcttgaaacaaaaatgtcatcaaattaaatacataaagataaagaaaaaattacctgcttcaatgatatagggaaagtgatccaacc |
7669689 |
T |
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| Q |
201 |
acactgttcaagtgtcttcacaacaccctttg |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7669690 |
acactgttcaagtgtcttcacaacaccctttg |
7669721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 7089660 - 7089895
Alignment:
| Q |
1 |
gccctttctctcttgataaaacactgaattggattgtctcttggacaaggctgaaaaacaaaataaaagacaaagtaataacacatttagtaccatacac |
100 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
7089660 |
gccctttccctcttaataaaacactgaattggattgtctcttggaccaggctgaaaaacaaaataaaggacaaagtaattacacatttagtaccttacac |
7089759 |
T |
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| Q |
101 |
catgtgcttccaagcttgaaacaaaaatgtcatcaaattaaatgcataaagata----aagaaaaaattacctgcttcaatgatatagggaaagtgatcc |
196 |
Q |
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| T |
7089760 |
catgtgcttccaagcttaaaacaaaaatgacatcaaatcaaatacataaataaagtgaaaaaaaaaattacctgcttcagtgatatagggaaagtgatcc |
7089859 |
T |
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| Q |
197 |
aaccacactgttcaagtgtcttcacaacaccctttg |
232 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
7089860 |
aaccacactgttcaagtgtcttcacaacaccctttg |
7089895 |
T |
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