View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_82 (Length: 240)
Name: NF9656_low_82
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_82 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9488361 - 9488587
Alignment:
| Q |
1 |
tcattgaaggacgatcaattggtttcatctgcatacaccacaatgcaactattatcatcttc---aatatcttctcctcctcttctgtaccattccccat |
97 |
Q |
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| T |
9488361 |
tcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttcagtatcttctcctcctcttctgtaccattccccat |
9488460 |
T |
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| Q |
98 |
ttctatttccttcccttcgctaaattggtcgtaaacccaagaagggagataaacttgactcttatgatcttctccctcattcatgttccttctcctactc |
197 |
Q |
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| T |
9488461 |
ttctatttccttcccttcgctaaattggtcgtaaacccaagaagggaaataaacttgactcttatgatcttcactctcattcatgttccttctcctactc |
9488560 |
T |
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| Q |
198 |
gccatttccattaacaccattccaaag |
224 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
9488561 |
gccatttccattaacaacattccaaag |
9488587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 9435823 - 9435985
Alignment:
| Q |
1 |
tcattgaaggacgatcaattggtttcatctgcatacaccacaatgcaactattatcatctt---caatatcttctcctcctcttctgtaccattccccat |
97 |
Q |
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||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |
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| T |
9435823 |
tcattgacggacgatcaattggtttcatctgtatataccacaatgcaactattatcatcttcttcaatatcttttcctcctcttctgtaccatttcccat |
9435922 |
T |
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| Q |
98 |
ttctatttccttcccttcgctaaattggtcgtaaacccaagaagggagataaacttgactctt |
160 |
Q |
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| T |
9435923 |
ttctatttccttcccttcgctaaattggtcgtaaacccaagaagggaaataaacttgactctt |
9435985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 9463841 - 9463991
Alignment:
| Q |
72 |
tcctcctcttctgtaccattccccatttctatttccttcccttcgctaaattggtcgtaaacccaagaagggagataaacttgactcttatgatcttctc |
171 |
Q |
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| T |
9463841 |
tcctcctcctccgtaccattccccatttctatttccttcccttcgctaaattggtcgtaaacccaagaagtgaaataaacttgactcttatgatcttcac |
9463940 |
T |
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| Q |
172 |
cctcattcatgttccttctcctactcgccatttccattaacaccattccaa |
222 |
Q |
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| T |
9463941 |
tctcattcatgttccttctcctactcgccatttccattaacaacattccaa |
9463991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9459198 - 9459276
Alignment:
| Q |
1 |
tcattgaaggacgatcaattggtttcatctgcatacaccacaatgcaactattatca---tcttcaatatcttctcctc |
76 |
Q |
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| T |
9459198 |
tcatcgaaggacggtcaattggtttcatctatatacaccacaacgcaactattatcatcttcttcaatatcttctcctc |
9459276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9463025 - 9463103
Alignment:
| Q |
1 |
tcattgaaggacgatcaattggtttcatctgcatacaccacaatgcaactattatca---tcttcaatatcttctcctc |
76 |
Q |
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| T |
9463025 |
tcatcgaaggacggtcaattggtttcatctatatacaccacaacgcaactattatcatcttcttcaatatcttctcctc |
9463103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9399440 - 9399491
Alignment:
| Q |
1 |
tcattgaaggacgatcaattggtttcatctgcatacaccacaatgcaactat |
52 |
Q |
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| T |
9399440 |
tcattgaaggacgatcaatgggtttcaactgtatacaccaaagtgcaactat |
9399491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9454126 - 9454075
Alignment:
| Q |
1 |
tcattgaaggacgatcaattggtttcatctgcatacaccacaatgcaactat |
52 |
Q |
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||||||||||||||||||| ||||||| ||| |||||||| ||| ||||||| |
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| T |
9454126 |
tcattgaaggacgatcaatgggtttcaactgtatacaccataatccaactat |
9454075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9486491 - 9486441
Alignment:
| Q |
1 |
tcattgaaggacgatcaattggtttcatctgcatacaccacaatgcaacta |
51 |
Q |
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| T |
9486491 |
tcattgaaggacgatcaatgggtttcaactgtatacaccaaagtgcaacta |
9486441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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