View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_84 (Length: 240)
Name: NF9656_low_84
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_84 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 24744867 - 24745092
Alignment:
| Q |
1 |
aacctgagaatattgtgtatcaacaaatgaaaattgttacgattgacaaaatacaagcataaattatgcacacataaaaatagaataaaacaaatccatc |
100 |
Q |
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| T |
24744867 |
aacctgcgaatattgtgtatcaacaaatgaaaattgttacgattgacaaaatacaagcataaattatgcacatataaaaatagaattaaacaaatccatc |
24744966 |
T |
|
| Q |
101 |
aatcatgnnnnnnnnn-ttaaaatagaataatacctttaccatggcagcaatgactccaagactggcaagtcttaaatcttcaaatggagctaacttact |
199 |
Q |
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| T |
24744967 |
aatcatgaagaaaaaaattaaaatagaataatacctttaccatggcagcaatgactccaagactggcaagtcttaaatcttcaaatggtgctaacttatt |
24745066 |
T |
|
| Q |
200 |
tgatgtattaaggaagggatacaaat |
225 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24745067 |
tgatgtattaaggaagggatacaaat |
24745092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 9518359 - 9518262
Alignment:
| Q |
128 |
taatacctttaccatggcagcaatgactccaagactggcaagtcttaaatcttcaaatggagctaacttacttgatgtattaaggaagggatacaaat |
225 |
Q |
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| T |
9518359 |
taataccttcaccaacgcaccgatgactccaagactagcaagtcttaaatgctcaaattgggctaactcgcttgttgtttgaaggaatggataaaaat |
9518262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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