View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9656_low_86 (Length: 239)

Name: NF9656_low_86
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9656_low_86
NF9656_low_86
[»] chr5 (5 HSPs)
chr5 (1-113)||(41930914-41931026)
chr5 (169-223)||(41930423-41930477)
chr5 (105-148)||(41930472-41930515)
chr5 (154-213)||(28499782-28499841)
chr5 (154-215)||(39063178-39063239)
[»] chr6 (1 HSPs)
chr6 (182-220)||(20890144-20890182)
[»] chr3 (2 HSPs)
chr3 (156-218)||(55121250-55121312)
chr3 (160-219)||(55121180-55121239)
[»] chr7 (2 HSPs)
chr7 (160-220)||(34465132-34465192)
chr7 (155-215)||(3485901-3485961)
[»] chr2 (2 HSPs)
chr2 (154-218)||(472412-472476)
chr2 (158-218)||(5746831-5746891)
[»] chr8 (2 HSPs)
chr8 (155-218)||(9503618-9503681)
chr8 (149-219)||(30557003-30557073)
[»] chr1 (1 HSPs)
chr1 (160-218)||(31032518-31032576)
[»] scaffold0003 (1 HSPs)
scaffold0003 (154-219)||(320746-320811)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 41931026 - 41930914
Alignment:
Q  1 tagtctactttttattttatccccaaaacttataatcttgagtacacattaattagtggtttctaatgctatgttaatcattatgctgatatattattag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41931026 tagtctactttttattttatccccaaaacttataatcttgagtacacattaattagtggtttctaatgctatgttaatcattatgctcatatattattag 41930927  T
Q  101 atagtttgatgaa 113  Q
    |||||||||||||    
T  41930926 atagtttgatgaa 41930914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 41930477 - 41930423
Alignment:
Q  169 ataaacaaaaggtaaatttttagagtcattaaataactaatgtatttggttaatt 223  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  41930477 ataaacaaaaagtaaatttttagagttattaaataactaatgtatttggttaatt 41930423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 41930515 - 41930472
Alignment:
Q  105 tttgatgaattaagaatcaatattcacgttagtacgcaataaac 148  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  41930515 tttgatgaattaagaatcaatattcacattagtacgcaataaac 41930472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 28499782 - 28499841
Alignment:
Q  154 cctccagtcacatttataaacaaaaggtaaatttttagagtcattaaataactaatgtat 213  Q
    ||||| ||||||||||||| |||||  ||| |||||||| ||||| ||||||||||||||    
T  28499782 cctccggtcacatttataagcaaaaaataattttttagattcattgaataactaatgtat 28499841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 39063239 - 39063178
Alignment:
Q  154 cctccagtcacatttataaacaaaaggtaaatttttagagtcattaaataactaatgtattt 215  Q
    |||||| |||||||||||| |||||  ||| |||||||| | |||||| |||||||||||||    
T  39063239 cctccaatcacatttataagcaaaatataattttttagatttattaaacaactaatgtattt 39063178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 20890144 - 20890182
Alignment:
Q  182 aaatttttagagtcattaaataactaatgtatttggtta 220  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  20890144 aaatttttagagtcattaaataactaatgtatttagtta 20890182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 55121312 - 55121250
Alignment:
Q  156 tccagtcacatttataaacaaaaggtaaatttttagagtcattaaataactaatgtatttggt 218  Q
    ||||||||||||||||| |||||  ||| |||||||| | ||||||||| |||||||||||||    
T  55121312 tccagtcacatttataagcaaaaaataactttttagatttattaaataattaatgtatttggt 55121250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 55121180 - 55121239
Alignment:
Q  160 gtcacatttataaacaaaaggtaaatttttagagtcattaaataactaatgtatttggtt 219  Q
    |||||||||||||||||||   || |||||||  ||||| ||||||||||||||||||||    
T  55121180 gtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtatttggtt 55121239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 34465132 - 34465192
Alignment:
Q  160 gtcacatttataaacaaaaggtaaatttttagagtcattaaataactaatgtatttggtta 220  Q
    |||||||||||||||||||   || |||||||  |||||| ||||||||||||||||||||    
T  34465132 gtcacatttataaacaaaaatcaactttttaggttcattatataactaatgtatttggtta 34465192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 3485961 - 3485901
Alignment:
Q  155 ctccagtcacatttataaacaaaaggtaaatttttagagtcattaaataactaatgtattt 215  Q
    |||||||||||||||||| |||||   || |||||||| ||||| |||| |||||||||||    
T  3485961 ctccagtcacatttataagcaaaacacaattttttagattcattgaatatctaatgtattt 3485901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 472412 - 472476
Alignment:
Q  154 cctccagtcacatttataaacaaaaggtaaatttttagagtcattaaataactaatgtatttggt 218  Q
    ||||| |||||||||||||||||||  ||| |||||||  | ||| |||||||||||||||||||    
T  472412 cctccggtcacatttataaacaaaatataactttttaggtttattgaataactaatgtatttggt 472476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 5746891 - 5746831
Alignment:
Q  158 cagtcacatttataaacaaaaggtaaatttttagagtcattaaataactaatgtatttggt 218  Q
    |||||||||||||||| ||||  ||| |||||||| ||||||||||  |||||||||||||    
T  5746891 cagtcacatttataaataaaaattaattttttagattcattaaatacgtaatgtatttggt 5746831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 9503681 - 9503618
Alignment:
Q  155 ctccagtcacatttataaacaaaaggtaaatttttagagtcattaaataactaatgtatttggt 218  Q
    ||||| ||||||||||||||||||  ||| |||||||| ||||| ||||  |||||||||||||    
T  9503681 ctccattcacatttataaacaaaaaataactttttagattcattgaatatttaatgtatttggt 9503618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 30557073 - 30557003
Alignment:
Q  149 tacatcctccagtcacatttataaacaaaaggtaaatttttagagtcattaaataactaatgtatttggtt 219  Q
    |||| ||||||||||||||||||||| |||   || |||||||  ||||| |||||| |||||||||||||    
T  30557073 tacaccctccagtcacatttataaacgaaaaacaactttttaggttcattgaataaccaatgtatttggtt 30557003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 31032576 - 31032518
Alignment:
Q  160 gtcacatttataaacaaaaggtaaatttttagagtcattaaataactaatgtatttggt 218  Q
    ||||||||||||| |||||   || |||||||  |||||||||||||||||||||||||    
T  31032576 gtcacatttataagcaaaactcaattttttaggttcattaaataactaatgtatttggt 31032518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 320811 - 320746
Alignment:
Q  154 cctccagtcacatttataaacaaaaggtaaatttttagagtcattaaataactaatgtatttggtt 219  Q
    |||||| |||||||||||| |||||   || |||||||| |||||||||||||||| ||| |||||    
T  320811 cctccaatcacatttataagcaaaacacaactttttagattcattaaataactaatatatctggtt 320746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University