View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_88 (Length: 234)
Name: NF9656_low_88
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_88 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 14399146 - 14399357
Alignment:
| Q |
2 |
agagagaagaatcaagagagaggataagatgtgaagtcaagattgtgggaatttaacaattctaagccccaaaatgattccattctaaggctttaaaaat |
101 |
Q |
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| T |
14399146 |
agagggaagaatcaagagagaggttaagatgtgaagtcaagatggtgggaatttaacaattctaagccccaaaatgattcaattctaaggctttaaaaat |
14399245 |
T |
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| Q |
102 |
gaaccaatagagagaggataaaataaatagaagaagaaacgattaaagagatgaatcaagagaaatcaaacaaaacatcaaactaaaacataagttaatc |
201 |
Q |
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| T |
14399246 |
gaaccgatagagagaggataaaataaat---agaagaaacgattaaagagatgaat-aagagaaatcaaacaaaacatgaaactaaaacataagttaatc |
14399341 |
T |
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| Q |
202 |
aatacacgtaccatgt |
217 |
Q |
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||||| |||||||||| |
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| T |
14399342 |
aatacgcgtaccatgt |
14399357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 54 - 217
Target Start/End: Original strand, 14403905 - 14404068
Alignment:
| Q |
54 |
ttaacaattctaagccccaaaatgattccattctaaggctttaaaaatgaaccaatagagagaggataaaataaatagaagaagaaacgattaaagagat |
153 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14403905 |
ttaacaattctaagccccaaaatgatttcattctaaggctttaaaaatgaaccaatagagagaggataaaataaatagaagaagaaacgattaaagagat |
14404004 |
T |
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| Q |
154 |
gaatcaagagaaatcaaacaaaacatcaaactaaaacataagttaatcaatacacgtaccatgt |
217 |
Q |
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| T |
14404005 |
taatcaagagaaatcaaacaaaacatcaaactaaaacataagttaatcaatacgcgtaccatgt |
14404068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 54 - 217
Target Start/End: Original strand, 14402369 - 14402532
Alignment:
| Q |
54 |
ttaacaattctaagccccaaaatgattccattctaaggctttaaaaatgaaccaatagagagaggataaaataaatagaagaagaaacgattaaagagat |
153 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14402369 |
ttaacaattctaagccccaaaatgatttcattctaaggctttaaaaatgaaccaatagagagaggataaaataaatagaagaagaatcgattaaagagat |
14402468 |
T |
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| Q |
154 |
gaatcaagagaaatcaaacaaaacatcaaactaaaacataagttaatcaatacacgtaccatgt |
217 |
Q |
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| T |
14402469 |
gaatcaagagaaatcaaacaaaacatcaaactaaaacataagttaatcaatatgcgtaccatgt |
14402532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 54 - 217
Target Start/End: Original strand, 14406687 - 14406850
Alignment:
| Q |
54 |
ttaacaattctaagccccaaaatgattccattctaaggctttaaaaatgaaccaatagagagaggataaaataaatagaagaagaaacgattaaagagat |
153 |
Q |
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| T |
14406687 |
ttaacaattctaagccccaaaatgatttcattctaaggctttaaaaatgaaccaatagagagaggataaaataaatagaagaagaaacgattaaagagat |
14406786 |
T |
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| Q |
154 |
gaatcaagagaaatcaaacaaaacatcaaactaaaacataagttaatcaatacacgtaccatgt |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14406787 |
taatcaagaggaatcaaacaaaacatcaaactaaaacataagttaatcaatacgcgtaccatgt |
14406850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 14399103 - 14399149
Alignment:
| Q |
105 |
ccaatagagagaggataaaataaatagaagaagaaacgattaaagag |
151 |
Q |
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| T |
14399103 |
ccaatagagagagtataaaataaatagaagaagaaacgattaaagag |
14399149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 14403110 - 14403149
Alignment:
| Q |
178 |
atcaaactaaaacataagttaatcaatacacgtaccatgt |
217 |
Q |
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| T |
14403110 |
atcaaactaaaacataagttaatcaatacgggtaccatgt |
14403149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 14405892 - 14405931
Alignment:
| Q |
178 |
atcaaactaaaacataagttaatcaatacacgtaccatgt |
217 |
Q |
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| T |
14405892 |
atcaaactaaaacataagttaatcaatacgggtaccatgt |
14405931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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