View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9656_low_9 (Length: 426)
Name: NF9656_low_9
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9656_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 16920638 - 16921035
Alignment:
| Q |
18 |
attttcaaaccaaactttcaatttgattagagaatattattagcttttgaaatttgaacttctattatgttccaagtgatcagatcagactcatgtctat |
117 |
Q |
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| T |
16920638 |
attttcaaaccaaactttcaattcgattagagaatattattagcttttgaaatttgaacttctattatgttccaagtgatcagatcagactcatgtctat |
16920737 |
T |
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| Q |
118 |
caacaaaaaggggaattggaattagattcagttttcaaactccataatgaatagagaatcacgtatctaccttatgtttttatatacaagtcttttgttt |
217 |
Q |
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| T |
16920738 |
caacaaaaaggggaattggaattagattcagttttcaaactccataatgaatagagaatcacgtatctaccttatgtttttatatacaagccttttgttt |
16920837 |
T |
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| Q |
218 |
gttacatcctaaaccttatgtgttcaatagtttttagtaacatccttcnnnnnnntagtttttagtaacatgttgcttacattgtttctatgtcacacac |
317 |
Q |
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| T |
16920838 |
gttacatgctaaaccttgtgtgttcaatagtttttagtaacatccttcaaaaaaatagtttttagtaacatgttgcttacattgtttttatgtcacacac |
16920937 |
T |
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| Q |
318 |
tgcaggatgaaatttcaagtccaattagtgcacaaatttttgaactttgtgaccctaatttgttccaagactctctacaacaaaattctgatgtaact |
415 |
Q |
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| T |
16920938 |
tgcaggatgaaatttcaagtccaattagtgcacaaatttttgaactttgtgaccctaatttgttccaagactctctacaacaaaattctgatgtaact |
16921035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 397
Target Start/End: Original strand, 782345 - 782448
Alignment:
| Q |
294 |
ttacattgtttctatgtcacacactgcaggatgaaatttcaa-gtccaattagtgcacaaatttttgaactttgtgaccctaatttgttccaagactctc |
392 |
Q |
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| T |
782345 |
ttacattgtttttatgtcacacgatgcatgatgaaatatcaaagtccgattagtgcacaaattttttaaatttgtg-ggctaaattgttccatgagtctc |
782443 |
T |
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| Q |
393 |
tacaa |
397 |
Q |
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| T |
782444 |
tacaa |
782448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 2461637 - 2461580
Alignment:
| Q |
33 |
tttcaatttgattagagaatattattagcttttg-aaatttgaacttctattatgttc |
89 |
Q |
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| T |
2461637 |
tttcaatttgattagagaatattcttagcttttgaaaatttcaacttcttttctgttc |
2461580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 397
Target Start/End: Complemental strand, 2461424 - 2461316
Alignment:
| Q |
289 |
gttgcttacattgtttctatgtcacacactgcaggatgaaatttcaagtccaattagtgcacaaatttttgaactttgtgaccctaatttgttccaagac |
388 |
Q |
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|||| ||||| ||||| ||||||||||| | |||| ||||| |||||| |||| | | | || ||||| ||||||||||| || | ||||||||||| |
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| T |
2461424 |
gttgtttacactgtttttatgtcacacatagtaggaagaaatatcaagtaaaatttgcgaagaatttttttaactttgtgacacttaattgttccaagaa |
2461325 |
T |
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| Q |
389 |
tctctacaa |
397 |
Q |
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||||||||| |
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| T |
2461324 |
tctctacaa |
2461316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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