View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9656_low_99 (Length: 217)

Name: NF9656_low_99
Description: NF9656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9656_low_99
NF9656_low_99
[»] chr8 (5 HSPs)
chr8 (105-183)||(27538977-27539055)
chr8 (118-183)||(44496710-44496774)
chr8 (178-217)||(15654252-15654291)
chr8 (178-217)||(27536395-27536434)
chr8 (178-217)||(15642926-15642965)
[»] scaffold1526 (1 HSPs)
scaffold1526 (118-183)||(4-68)
[»] scaffold0642 (1 HSPs)
scaffold0642 (118-183)||(5224-5288)
[»] scaffold0345 (1 HSPs)
scaffold0345 (118-183)||(15137-15201)
[»] scaffold0105 (1 HSPs)
scaffold0105 (118-183)||(23780-23844)
[»] scaffold0016 (1 HSPs)
scaffold0016 (118-183)||(52688-52752)
[»] chr2 (1 HSPs)
chr2 (118-183)||(3379444-3379508)
[»] chr6 (1 HSPs)
chr6 (121-172)||(1098335-1098386)
[»] chr5 (1 HSPs)
chr5 (178-217)||(22003591-22003630)
[»] chr4 (1 HSPs)
chr4 (138-183)||(15707615-15707659)


Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 27539055 - 27538977
Alignment:
Q  105 gctagatatatattttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac 183  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27539055 gctagatatatactttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac 27538977  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 44496710 - 44496774
Alignment:
Q  118 tttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac 183  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  44496710 tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac 44496774  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 15654291 - 15654252
Alignment:
Q  178 tttaacattccaagaagtcgacatgggtttgattttgttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15654291 tttaacattccaagaagtcgacatgggtttgattttgttg 15654252  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 27536434 - 27536395
Alignment:
Q  178 tttaacattccaagaagtcgacatgggtttgattttgttg 217  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  27536434 tttaacattccaagaagtcgacatgggtctgattttgttg 27536395  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 15642965 - 15642926
Alignment:
Q  178 tttaacattccaagaagtcgacatgggtttgattttgttg 217  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  15642965 tttaacattccaagaaatcgacatgggtctgattttgttg 15642926  T

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Target: scaffold1526 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 68 - 4
Alignment:
Q  118 tttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac 183  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  68 tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac 4  T

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Target: scaffold0642 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 5224 - 5288
Alignment:
Q  118 tttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac 183  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  5224 tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac 5288  T

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Target: scaffold0345 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 15137 - 15201
Alignment:
Q  118 tttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac 183  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  15137 tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac 15201  T

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Target: scaffold0105 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 23844 - 23780
Alignment:
Q  118 tttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac 183  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  23844 tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac 23780  T

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Target: scaffold0016 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 52752 - 52688
Alignment:
Q  118 tttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac 183  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  52752 tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac 52688  T

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Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 3379444 - 3379508
Alignment:
Q  118 tttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac 183  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  3379444 tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac 3379508  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 1098335 - 1098386
Alignment:
Q  121 caaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaa 172  Q
    ||||||||||| |||||||||||| |||||| |||||| |||||||||||||    
T  1098335 caaatgtggctcctaaagtgattcatgaaacatgaaaaacaatgttatgtaa 1098386  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 22003630 - 22003591
Alignment:
Q  178 tttaacattccaagaagtcgacatgggtttgattttgttg 217  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  22003630 tttaacattccaagaagtcgacatgggtctgattttgttg 22003591  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 15707615 - 15707659
Alignment:
Q  138 gtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac 183  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  15707615 gtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac 15707659  T

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