View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9657_high_9 (Length: 240)
Name: NF9657_high_9
Description: NF9657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9657_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7370383 - 7370605
Alignment:
| Q |
1 |
taataatatcaagatcacaaagctatcaataattttgactcttcattcatttgaaattgaagctaaaaagaagaaaccatataagatgttgataaaataa |
100 |
Q |
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| T |
7370383 |
taataatatcaagatctcaaagctatcaataattttgactcttcattcatttgaaattgaagctaaaaagaagaaatcatataagatgttgataaaataa |
7370482 |
T |
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| Q |
101 |
actagaagttgcaacatttcaaaagagaagnnnnnnnnnnnnccattaatgaaaggatgaagatgttgctagcttgagataactccgaagaaaactttgg |
200 |
Q |
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| T |
7370483 |
actagaagttgcaacatttcaaaagagaagaaaaacaaaaaacgatcaatgaaaggatgaagatgttgctagcttgagataactccgaagaaaactttgg |
7370582 |
T |
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| Q |
201 |
agacacttcactctatcctccag |
223 |
Q |
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| T |
7370583 |
agacacttcactctatcctccag |
7370605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 7322775 - 7322863
Alignment:
| Q |
38 |
actcttcattcatttgaaattgaagctaaaaagaagaaaccatataagatgttgataaaataaactagaagttgcaacatttcaaaagag |
127 |
Q |
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| T |
7322775 |
actcttcattcattttaaattgaagc-aaaaagaagcaaccatacaagacgataatcaagtaaactagaagttccaacatttcaaaagag |
7322863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 7291202 - 7291285
Alignment:
| Q |
42 |
ttcattcatttgaaattgaagctaaaaagaagaaaccatataagatgttg--ataaaataaactagaagttgcaacatttcaaaa |
124 |
Q |
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| T |
7291202 |
ttcattcattttaaattgaag-taaaaagaagcgatcatataagatgatataatcaaataaaccagaagttgcaacatttcaaaa |
7291285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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