View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9657_low_13 (Length: 274)
Name: NF9657_low_13
Description: NF9657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9657_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 15182539 - 15182295
Alignment:
| Q |
19 |
cccacataacagcataaaatccaatggctattatagcagctccaatcatgctgcgacaataagtaaaacaaattttaaaatgaaaatgctattatttaaa |
118 |
Q |
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| T |
15182539 |
cccacataacagcataaaatccaatggctattatagcagctccaatcatgctgcaacaataagtaaaacaacttttaaaatgaaaatgctattatttaaa |
15182440 |
T |
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| Q |
119 |
ttatttctaacaaattggttgttttttaatgaaatgaatttatttaccttccaagataaagactatctcccaaaaatattacccccataccaagtgcaat |
218 |
Q |
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| T |
15182439 |
ttatttctaacaaattggttgttttttaatgaaatgaatttatttaccttccaagataaagactatctcccaaaaatattacccccatgccaagtgcaat |
15182340 |
T |
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| Q |
219 |
gaccattcctaaagggttgaacatagctacatatattggtccttt |
263 |
Q |
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| T |
15182339 |
gaccattcctaatgggttgaacatagctacatatattggtccttt |
15182295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 150 - 263
Target Start/End: Complemental strand, 15192357 - 15192244
Alignment:
| Q |
150 |
aaatgaatttatttaccttccaagataaagactatctcccaaaaatattacccccataccaagtgcaatgaccattcctaaagggttgaacatagctaca |
249 |
Q |
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| T |
15192357 |
aaatgtatttatttaccttccaagataaagattgtttcccaaaaataatatccccatgccaagtgcaatgaccactcttaaagggttgaacatagctaca |
15192258 |
T |
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| Q |
250 |
tatattggtccttt |
263 |
Q |
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| T |
15192257 |
tatattggtccttt |
15192244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 160 - 263
Target Start/End: Complemental strand, 15211164 - 15211061
Alignment:
| Q |
160 |
atttaccttccaagataaagactatctcccaaaaatattacccccataccaagtgcaatgaccattcctaaagggttgaacatagctacatatattggtc |
259 |
Q |
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| T |
15211164 |
atttaccttccaagataaagattgtctcccaaaaatattacccccatgctaagtgcaatgaccactcttaaaggtttgaacatagctacatatattggtc |
15211065 |
T |
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| Q |
260 |
cttt |
263 |
Q |
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|||| |
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| T |
15211064 |
cttt |
15211061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 15204875 - 15204774
Alignment:
| Q |
163 |
taccttccaagataaagactatctcccaaaaatattacccc-cataccaagtgcaatgaccattcctaaagggttgaacatagctacatatattggtcct |
261 |
Q |
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| T |
15204875 |
taccttccaagataaagattgtctcccaaaaatattaccccgcatgccaagtgcaatgaccactcttaaagggttgaaggtagctacatatattggtcct |
15204776 |
T |
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| Q |
262 |
tt |
263 |
Q |
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|| |
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| T |
15204775 |
tt |
15204774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 15211307 - 15211238
Alignment:
| Q |
27 |
acagcataaaatccaatggctattatagcagctccaatcatgctgcgacaataagtaaaacaaattttaa |
96 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||| |||||||| |||| | |||||| |
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| T |
15211307 |
acagcataaaatccaataactatgatagcagctccaatcatgctgcaccaataagttaaaccatttttaa |
15211238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 15192499 - 15192447
Alignment:
| Q |
19 |
cccacataacagcataaaatccaatggctattatagcagctccaatcatgctg |
71 |
Q |
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||||||| |||||||||||||||||| |||| |||| |||||||||||||||| |
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| T |
15192499 |
cccacatcacagcataaaatccaatgactatgatagaagctccaatcatgctg |
15192447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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