View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9657_low_14 (Length: 255)
Name: NF9657_low_14
Description: NF9657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9657_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 53884186 - 53884426
Alignment:
| Q |
1 |
attccaaaatcgtgaagaaccttcttcatcttgttctacaaccgaaccttgagaagtttgagggttggaccgaaccggtgtacggcaagtaggacacgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
53884186 |
attccaaaatcgtgaagaaccttcttcatcttgttctacaaccgaaccttgagaagtttgagggttagaccgaaccggtgtacggcaagtaggacacgtg |
53884285 |
T |
|
| Q |
101 |
gcaaccttaagaagccacgtatcaatacatctccgatgaaaaacatgaccacaagcagcgagatttcgacaccattgaccattacgaaaaccatccaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53884286 |
gcaaccttaagaagccacgtatcaatacatctccgatgaaaaacatgaccacaagcagcgagatttcgacaccattgaccattacgaaaaccatccaaac |
53884385 |
T |
|
| Q |
201 |
aaacagcacaacgagaatcgggttcggaaacggatcctttg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53884386 |
aaacagcacaacgagaatcgggttcggaaacggatcctttg |
53884426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 53890300 - 53890540
Alignment:
| Q |
1 |
attccaaaatcgtgaagaaccttcttcatcttgttctacaaccgaaccttgagaagtttgagggttggaccgaaccggtgtacggcaagtaggacacgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
53890300 |
attccaaaatcgtgaagaaccttcttcatcttgttctacaaccgaaccttgagaagtttgagggttagaccgaaccggtgtacggcaagtaggacacgtg |
53890399 |
T |
|
| Q |
101 |
gcaaccttaagaagccacgtatcaatacatctccgatgaaaaacatgaccacaagcagcgagatttcgacaccattgaccattacgaaaaccatccaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53890400 |
gcaaccttaagaagccacgtatcaatacatctccgatgaaaaacatgaccacaagcagcgagatttcgacaccattgaccattacgaaaaccatccaaac |
53890499 |
T |
|
| Q |
201 |
aaacagcacaacgagaatcgggttcggaaacggatcctttg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53890500 |
aaacagcacaacgagaatcgggttcggaaacggatcctttg |
53890540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University