View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9657_low_18 (Length: 244)
Name: NF9657_low_18
Description: NF9657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9657_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 45790242 - 45790469
Alignment:
| Q |
1 |
caaacattgacatgttgacattagtaatagcatgagaaaattgaaaaattgaatgtaatcatatatgtgggtgtcgtcggtcgtgcaacaagtaacaaca |
100 |
Q |
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| T |
45790242 |
caaacattgacatgttgacattaataatagcatgagaaaattgaaaaattgaatgtaatcatatatgtgggtgtcgtcggtcgtctaacaagtaacaact |
45790341 |
T |
|
| Q |
101 |
agcaatttgaaatgttggtattgtaggtttactatgtggtgtgggtcccattttctatttggtgggacacattagtaaagaaataagactcatgtgattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45790342 |
agcaatttgaaatgttggtattgtaggtttactatgtggtgtgggtcccattttctatttggtgggacacattagtaaagaaataagactcacatgattc |
45790441 |
T |
|
| Q |
201 |
ttctttttagggaggaacgtgttagaaa |
228 |
Q |
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|||||||||| ||||||||||||||||| |
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| T |
45790442 |
ttctttttagcgaggaacgtgttagaaa |
45790469 |
T |
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