View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9657_low_19 (Length: 242)
Name: NF9657_low_19
Description: NF9657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9657_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5708277 - 5708053
Alignment:
| Q |
1 |
aagtaaatgcttaagttcttttttccaacttgtaaatatattggatcaaagtaatgatttgaagaaaagcaaaaagatatttttaaaagcacttaggatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5708277 |
aagtaaatgcttaagttcttttttccaacttgtaaatatattggatcaaagtaatgatttgaagaaaagcaaaaagatatttttaaaagcacttaggatc |
5708178 |
T |
|
| Q |
101 |
caacaaaaatgatctatatataaacaatcaatggaaattctcactgccttatcttggtagaacattagaaatttgatagctataatttttctttttattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5708177 |
caacaaaaatgatctatatataaacaatcaatggaaattctcactgccttatcttggtagaacattagaaatttgatagctataatttttctttttattg |
5708078 |
T |
|
| Q |
201 |
ttgattgtgtttgtgattatgtatt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
5708077 |
ttgattgtgtttgtgattatgtatt |
5708053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 2887146 - 2887370
Alignment:
| Q |
1 |
aagtaaatgcttaagttcttttttccaacttgtaaatatattggatcaaagtaatgatttgaagaaaagcaaaaagatatttttaaaagcacttaggatc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2887146 |
aagtaaatgcttaagttcttttttccaacttgtaaatatattggatcaaagtaatgatttgaagaaaagcaaaaagatatttttaaaagcacttaggatc |
2887245 |
T |
|
| Q |
101 |
caacaaaaatgatctatatataaacaatcaatggaaattctcactgccttatcttggtagaacattagaaatttgatagctataatttttctttttattg |
200 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2887246 |
caacaaaaatgatctatataaaaacaatcaatggaaattctcactgccttatcttggtagaacattagaaatttgatagctataatttttctttttattg |
2887345 |
T |
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| Q |
201 |
ttgattgtgtttgtgattatgtatt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
2887346 |
ttgattgtgtttgtgattatgtatt |
2887370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16184902 - 16184678
Alignment:
| Q |
1 |
aagtaaatgcttaagttcttttttccaacttgtaaatatattggatcaaagtaatgatttgaagaaaagcaaaaagatatttttaaaagcacttaggatc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16184902 |
aagtaaatgcttaagttcttttttccaacttgtaaatatattggatcaaagtaatgatttgaagaaaagcaaaaagatatttttaaaagcacttaggatc |
16184803 |
T |
|
| Q |
101 |
caacaaaaatgatctatatataaacaatcaatggaaattctcactgccttatcttggtagaacattagaaatttgatagctataatttttctttttattg |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16184802 |
caacaaaaatgatctatataaaaacaatcaatggaaattctcactgccttatcttggtagaacattagaaatttgatagctataatttttctttttattg |
16184703 |
T |
|
| Q |
201 |
ttgattgtgtttgtgattatgtatt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
16184702 |
ttgattgtgtttgtgattatgtatt |
16184678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8355674 - 8355625
Alignment:
| Q |
1 |
aagtaaatgcttaagttcttttttccaacttgtaaatatattggatcaaa |
50 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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|
| T |
8355674 |
aagtaaatgcttaagttcttttttccaacttataaatatatgggatcaaa |
8355625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 23534396 - 23534315
Alignment:
| Q |
33 |
taaatatattggatcaaagtaatgatttgaa----gaaaagcaaaaagatatttttaaaagcacttaggatccaacaaaaat |
110 |
Q |
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||||||||| |||||||| |||||||||||| |||||| ||||||||||||||||||||| |||||||| ||||||||| |
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| T |
23534396 |
taaatatatgggatcaaaataatgatttgaatcaagaaaagaaaaaagatatttttaaaagcatttaggatcaaacaaaaat |
23534315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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