View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9657_low_4 (Length: 455)

Name: NF9657_low_4
Description: NF9657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9657_low_4
NF9657_low_4
[»] chr7 (14 HSPs)
chr7 (1-448)||(26192214-26192661)
chr7 (311-448)||(26278645-26278782)
chr7 (308-448)||(26180032-26180172)
chr7 (308-448)||(26121264-26121404)
chr7 (311-448)||(26298397-26298534)
chr7 (308-448)||(26129519-26129659)
chr7 (316-448)||(26243349-26243481)
chr7 (308-448)||(26251797-26251937)
chr7 (309-448)||(26156140-26156279)
chr7 (272-448)||(19102569-19102745)
chr7 (331-445)||(26204837-26204951)
chr7 (331-435)||(26224484-26224588)
chr7 (383-448)||(26302758-26302823)
chr7 (183-251)||(26252006-26252074)
[»] chr4 (2 HSPs)
chr4 (308-440)||(44904210-44904342)
chr4 (178-274)||(44904399-44904495)


Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 26192661 - 26192214
Alignment:
Q  1 ttatagttatggaacctttgttacctcaattttgaaacctgtcatcaacatatactttacttcacctggagttatatagtatactacagcgtatcgcata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  26192661 ttatagttatggaacctttgttacctcaattttgaaacctgtcatcaacatatactttacttcacctggagttatacagtatactacaacgtatcgcata 26192562  T
Q  101 atggaacactaaaatatttgtagtgatgaattaatacatattgttataaggcaaaccgaagtgcacaataattggatattgattcatcttattgaactcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26192561 atggaacactaaaatatttgtagtgatgaattaatacatattgttataaggcaaactgaagtgcacaataattggatattgattcatcttattgaactcc 26192462  T
Q  201 agataacagcaaaaagtagctggagagaaaaacttggatgttgtttcatcatattcaaagccttaatcagctactccttcatttcaattctctagtctgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26192461 agataacagcaaaaagtagctggagagaaaaacttggatgttgtttcatcatattcaaagccttaatcagctactccttcatttcaattctctagtctgc 26192362  T
Q  301 cgagtcgccaagtgctttagatttcatcagtgatttcagctcatcaatgcactgaatcaagttgttgtaagaatgtccaccttcctctatagtccgcctg 400  Q
     ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||    
T  26192361 tgagtcaccaagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtatgaatgtccaccttcctctatagtcctcttg 26192262  T
Q  401 gaagcagccccaagtttctttgctctcatcctcatttcttcgctctct 448  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||    
T  26192261 gaagcatcaccaagtttctttgctctcatcctcatttctttgctctct 26192214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 311 - 448
Target Start/End: Complemental strand, 26278782 - 26278645
Alignment:
Q  311 agtgctttagatttcatcagtgatttcagctcatcaatgcactgaatcaagttgttgtaagaatgtccaccttcctctatagtccgcctggaagcagccc 410  Q
    ||||||||||||||| ||| ||||||||||||||||||  | |||||||||||||||||||| |||||||||||||||||||||| | ||| |||| | |    
T  26278782 agtgctttagatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagagtgtccaccttcctctatagtcctcttggcagcatcac 26278683  T
Q  411 caagtttctttgctctcatcctcatttcttcgctctct 448  Q
    |||||||||||||||||||||||||||||| |||||||    
T  26278682 caagtttctttgctctcatcctcatttctttgctctct 26278645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 308 - 448
Target Start/End: Complemental strand, 26180172 - 26180032
Alignment:
Q  308 ccaagtgctttagatttcatcagtgatttcagctcatcaatgcactgaatcaagttgttgtaagaatgtccaccttcctctatagtccgcctggaagcag 407  Q
    |||||||| ||||||||| | | ||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||||| | ||||||||     
T  26180172 ccaagtgccttagatttctttaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctcaatagtcctcttggaagcat 26180073  T
Q  408 ccccaagtttctttgctctcatcctcatttcttcgctctct 448  Q
    | ||||||||||||||||||||||||||||||| |||||||    
T  26180072 caccaagtttctttgctctcatcctcatttctttgctctct 26180032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 308 - 448
Target Start/End: Complemental strand, 26121404 - 26121264
Alignment:
Q  308 ccaagtgctttagatttcatcagtgatttcagctcatcaatgcactgaatcaagttgttgtaagaatgtccaccttcctctatagtccgcctggaagcag 407  Q
    |||||||||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| ||| | ||| |||      
T  26121404 ccaagtgctttagatttcttcaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatgtccacgttcctctataatcctcttggcagcct 26121305  T
Q  408 ccccaagtttctttgctctcatcctcatttcttcgctctct 448  Q
    | ||||||||||||||||||||| ||||||||| |||||||    
T  26121304 caccaagtttctttgctctcatcatcatttctttgctctct 26121264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 311 - 448
Target Start/End: Complemental strand, 26298534 - 26298397
Alignment:
Q  311 agtgctttagatttcatcagtgatttcagctcatcaatgcactgaatcaagttgttgtaagaatgtccaccttcctctatagtccgcctggaagcagccc 410  Q
    ||||||||||||||| ||| ||||||||||||||||||  | |||||||||||||||||||||| ||||||||| |||||||||| | ||| |||  | |    
T  26298534 agtgctttagatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcttctatagtcctcttggcagcctcgc 26298435  T
Q  411 caagtttctttgctctcatcctcatttcttcgctctct 448  Q
     ||||||||||||||||||||||||||||| |||||||    
T  26298434 taagtttctttgctctcatcctcatttctttgctctct 26298397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 308 - 448
Target Start/End: Complemental strand, 26129659 - 26129519
Alignment:
Q  308 ccaagtgctttagatttcatcagtgatttcagctcatcaatgcactgaatcaagttgttgtaagaatgtccaccttcctctatagtccgcctggaagcag 407  Q
    |||||||||||||||||| ||| ||||||||||||||||||  | |||||||||||||||||||||| |||||||||||| ||||||| | ||| |||      
T  26129659 ccaagtgctttagatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcctcaatagtcctcttggcagcct 26129560  T
Q  408 ccccaagtttctttgctctcatcctcatttcttcgctctct 448  Q
    | ||||| || |||||||||||||||||||||| |||||||    
T  26129559 caccaagcttttttgctctcatcctcatttctttgctctct 26129519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 316 - 448
Target Start/End: Complemental strand, 26243481 - 26243349
Alignment:
Q  316 tttagatttcatcagtgatttcagctcatcaatgcactgaatcaagttgttgtaagaatgtccaccttcctctatagtccgcctggaagcagccccaagt 415  Q
    |||||||||| |||  |||||||||||||||||  |||||||||||||||||||||||| |||||| |||||||||||||   ||| |||| | ||||||    
T  26243481 tttagatttcttcaacgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccctcctctatagtccttttggcagcatcaccaagt 26243382  T
Q  416 ttctttgctctcatcctcatttcttcgctctct 448  Q
    ||||||||||||||||||||||||| |||||||    
T  26243381 ttctttgctctcatcctcatttctttgctctct 26243349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 308 - 448
Target Start/End: Complemental strand, 26251937 - 26251797
Alignment:
Q  308 ccaagtgctttagatttcatcagtgatttcagctcatcaatgcactgaatcaagttgttgtaagaatgtccaccttcctctatagtccgcctggaagcag 407  Q
    ||||| |||||| ||||| ||| ||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||| ||||   |||  |||     
T  26251937 ccaagcgctttatatttcttcaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatcgtccttttggctgcat 26251838  T
Q  408 ccccaagtttctttgctctcatcctcatttcttcgctctct 448  Q
    | ||||||||||||||||||||||||||||||| |||||||    
T  26251837 cgccaagtttctttgctctcatcctcatttctttgctctct 26251797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 309 - 448
Target Start/End: Complemental strand, 26156279 - 26156140
Alignment:
Q  309 caagtgctttagatttcatcagtgatttcagctcatcaatgcactgaatcaagttgttgtaagaatgtccaccttcctctatagtccgcctggaagcagc 408  Q
    |||||| |||||||||| ||| ||||||||| ||||||||  |||||||||||||||||||||||| ||||||||| |||||||||| | ||| |||| |    
T  26156279 caagtggtttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcttctatagtcctcttggcagcatc 26156180  T
Q  409 cccaagtttctttgctctcatcctcatttcttcgctctct 448  Q
     ||||||||||||||||||| ||||||| ||| |||||||    
T  26156179 accaagtttctttgctctcaccctcattgctttgctctct 26156140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 272 - 448
Target Start/End: Original strand, 19102569 - 19102745
Alignment:
Q  272 tactccttcatttcaattctctagtctgccgagtcgccaagtgctttagatttcatcagtgatttcagctcatcaatgcactgaatcaagttgttgtaag 371  Q
    ||||||||||||| |||| |||| |||||    || |||||||  ||||||||| ||| ||||||||||||||||||  || ||||||||||||||| ||    
T  19102569 tactccttcatttgaattatctaatctgctttctcaccaagtgacttagatttcttcaatgatttcagctcatcaatcaacagaatcaagttgttgtgag 19102668  T
Q  372 aatgtccaccttcctctatagtccgcctggaagcagccccaagtttctttgctctcatcctcatttcttcgctctct 448  Q
    | |||||||| ||||||||||||| | | | |||| | ||||| ||||||||||||||||||||||||| |||||||    
T  19102669 agtgtccaccctcctctatagtcctctttgcagcatcaccaagcttctttgctctcatcctcatttctttgctctct 19102745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 26204951 - 26204837
Alignment:
Q  331 tgatttcagctcatcaatgcactgaatcaagttgttgtaagaatgtccaccttcctctatagtccgcctggaagcagccccaagtttctttgctctcatc 430  Q
    |||||| |||||||||||  |||||||||||||||||||||||| |||||||||||||||||||  | ||| |||| | ||||| |||||||||||||||    
T  26204951 tgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcttcttggcagcatcaccaagcttctttgctctcatc 26204852  T
Q  431 ctcatttcttcgctc 445  Q
    |||||||||| ||||    
T  26204851 ctcatttctttgctc 26204837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 331 - 435
Target Start/End: Complemental strand, 26224588 - 26224484
Alignment:
Q  331 tgatttcagctcatcaatgcactgaatcaagttgttgtaagaatgtccaccttcctctatagtccgcctggaagcagccccaagtttctttgctctcatc 430  Q
    |||||| |||||||||||  | |||||||||||||||||||||| |||||||||||||||||||  | | | |||| | ||||| |||||||||||||||    
T  26224588 tgattttagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcctctatagtcttctttgcagcatcaccaagcttctttgctctcatc 26224489  T
Q  431 ctcat 435  Q
    |||||    
T  26224488 ctcat 26224484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 448
Target Start/End: Complemental strand, 26302823 - 26302758
Alignment:
Q  383 tcctctatagtccgcctggaagcagccccaagtttctttgctctcatcctcatttcttcgctctct 448  Q
    ||||||||||||| | |||||||||| ||||| || || ||| || |||||||||||| |||||||    
T  26302823 tcctctatagtcctcttggaagcagcaccaagatttttagctttcttcctcatttctttgctctct 26302758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 26252074 - 26252006
Alignment:
Q  183 ttcatcttattgaactccagataacagcaaaaagtagctggagagaaaaacttggatgttgtttcatca 251  Q
    |||||||||||||| | |||||| |||||| || ||||| |||| ||| | ||||||| ||||||||||    
T  26252074 ttcatcttattgaattacagatagcagcaagaaatagctagagaaaaataattggatggtgtttcatca 26252006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 308 - 440
Target Start/End: Complemental strand, 44904342 - 44904210
Alignment:
Q  308 ccaagtgctttagatttcatcagtgatttcagctcatcaatgcactgaatcaagttgttgtaagaatgtccaccttcctctatagtccgcctggaagcag 407  Q
    ||||||||||| |||||| ||| ||||||||||||||| ||  |||||| ||||||||||||||| |||||||||||||||||||||| | ||| ||||     
T  44904342 ccaagtgctttggatttcttcaatgatttcagctcatctatcaactgaaccaagttgttgtaagagtgtccaccttcctctatagtcctcttggcagcat 44904243  T
Q  408 ccccaagtttctttgctctcatcctcatttctt 440  Q
    | ||||  || ||||||||| ||||||||||||    
T  44904242 cgccaaacttttttgctctcgtcctcatttctt 44904210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 44904495 - 44904399
Alignment:
Q  178 attgattcatcttattgaactccagataacagcaaaaagtagctggagagaaaaacttggatgttgtttcatcatattcaaagccttaatcagctac 274  Q
    |||| ||||||||||||||||||| || |||| ||||| || | ||||||||||| |||||| |||||| |||||||  |||||||| | |||||||    
T  44904495 attgtttcatcttattgaactccaaatcacagaaaaaaataaccggagagaaaaagttggatattgttttatcatatctaaagccttcaccagctac 44904399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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