View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9657_low_9 (Length: 297)
Name: NF9657_low_9
Description: NF9657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9657_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 3114830 - 3115097
Alignment:
| Q |
18 |
tccatctctagtatccctaatgagactaacattgtagtaaacagaccaaccaacaatatataccaatcgtcgcgcctgacttattgcatcaaagatatca |
117 |
Q |
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| T |
3114830 |
tccatctctagtatccctaatgagactaacattgtagtaaacagaccaaccaacaatatataccaatcgtcgcgcctgacttattgcatcaaagatatca |
3114929 |
T |
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| Q |
118 |
tgccaacaatttccactgtcataactcaaatcatgatcaccaccatcaaccctcaaactaggaagacaaccttgtggaacatgagcatcttgataaagtg |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3114930 |
tgccaacaatttccactctcataactcaaatcatgatcaccaccatcaaccctcaaactaggaagacaaccttgtggaacatgagcatcttgataaagtg |
3115029 |
T |
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| Q |
218 |
taacttttccaccttttctaagtggaaagtatgtagcaggaacaccttgaaaatcaccaccaacacca |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3115030 |
taacttttccaccttttctaagtggaaagtatgtagcaggaacaccttgaaaatcaccaccaacacca |
3115097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 3120686 - 3120953
Alignment:
| Q |
18 |
tccatctctagtatccctaatgagactaacattgtagtaaacagaccaaccaacaatatataccaatcgtcgcgcctgacttattgcatcaaagatatca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |
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| T |
3120686 |
tccatctctagtatccctaatgagactaacattgtagtacacggaccaaccaacaatatagaccaatcgacgagcctgacttattgcatcaaagatatct |
3120785 |
T |
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| Q |
118 |
tgccaacaatttccactgtcataactcaaatcatgatcaccaccatcaaccctcaaactaggaagacaaccttgtggaacatgagcatcttgataaagtg |
217 |
Q |
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||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3120786 |
tgccaacaatttccactctcataaataacatcatgatcaccaccatcaaccctcaaaccaggaagacaaccttgtggaacatgagcatcttgataaagtg |
3120885 |
T |
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| Q |
218 |
taacttttccaccttttctaagtggaaagtatgtagcaggaacaccttgaaaatcaccaccaacacca |
285 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||||||| |
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| T |
3120886 |
taacttttccaccttttctaagtggaaaatatgtagcaggaacgccttgataatcagaaccaacacca |
3120953 |
T |
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