View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9658_high_3 (Length: 442)
Name: NF9658_high_3
Description: NF9658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9658_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Original strand, 21110859 - 21111255
Alignment:
| Q |
16 |
acctgtgctagagattgcaactcacctcttaaccgtctcaggtgtttaaaagtcactannnnnnnagattaaaatatcgaaagttaagcctagtgtacta |
115 |
Q |
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| T |
21110859 |
acctgtgctagagattgcaactcacctcttaaccgtctcaggtgtttaaaagtcactatttttttagattaaaatatcgaaagttaagtctagtgtacta |
21110958 |
T |
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| Q |
116 |
aatttgagaataatgcttaaatatgtctatgtctaattgagaataatgtcatccaatttgtgaggtggaaatgagaaatgagaacatttttgttatgcta |
215 |
Q |
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| T |
21110959 |
agtttgagaataatgcttaaatatgtctatgtctaattgagaataatgtcatccaatttgtgaggtggaaatgagaaatgagaacatttttgttatgcta |
21111058 |
T |
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| Q |
216 |
atatgacaatgatagttgcaatccaaaatttataccaactcgttggcatcaacagtcatgaaattgattatttctccataagtatggcactgtcttaatt |
315 |
Q |
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| T |
21111059 |
acatgacaatgatagttgcaatccaaaatttataccaactcgttggcatcaacagtcatgaaattgattatttctccataagtatggcactgtcttaatt |
21111158 |
T |
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| Q |
316 |
gacctgaaagtgttaaggctttattatatatcatagtcacaagcagtgcttgggttcgaagtccgagtggctgcaacctaaggaactaatgcctctgt |
413 |
Q |
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| T |
21111159 |
-acctgaaagtgttgaggctttattatatatcatagtcacaagcagtgcttgggttcgaagtccgagtggctgcaacctaaggaactaatgcctctgt |
21111255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 248 - 413
Target Start/End: Original strand, 41452668 - 41452834
Alignment:
| Q |
248 |
taccaactcgtt-ggcatcaacagtcatgaaattgattatttctccataagtatggcactgtcttaattgacctgaaagtgttaaggctttattatatat |
346 |
Q |
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| T |
41452668 |
taccaactctttcggcatcaacagtcatgaaattgattatttctccagaagtatggcactgtcttgattgacctgaaagtgttaaggctttactatatat |
41452767 |
T |
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| Q |
347 |
catagtcacaagcagtgcttgggttcgaagtccgagtggctgcaacctaaggaactaatgcctctgt |
413 |
Q |
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| T |
41452768 |
catagtcacaagcagtgctcgggttcgaagtccgagttgctgcaacctaaagaaccaatgcctctgt |
41452834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 260 - 413
Target Start/End: Original strand, 41439512 - 41439665
Alignment:
| Q |
260 |
ggcatcaacagtcatgaaattgattatttctccataagtatggcactgtcttaattgacctgaaagtgttaaggctttattatatatcatagtcacaagc |
359 |
Q |
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| T |
41439512 |
ggcatcaacagtcatgaaattgattatttctccagaggtatggcactgtcttgattgacctgaaagtgttaaggctttaccatatatcatagtcacaagc |
41439611 |
T |
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| Q |
360 |
agtgcttgggttcgaagtccgagtggctgcaacctaaggaactaatgcctctgt |
413 |
Q |
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| T |
41439612 |
agtgctcgggttcaaagtccgaattgctgcaacctaaagaaccaatgcctctgt |
41439665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 261 - 402
Target Start/End: Complemental strand, 14371654 - 14371513
Alignment:
| Q |
261 |
gcatcaacagtcatgaaattgattatttctccataagtatggcactgtcttaattgacctgaaagtgttaaggctttattatatatcatagtcacaagca |
360 |
Q |
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| T |
14371654 |
gcatcaacggtcatgaaattgattatttctccagaagtgtgacactgccttgattgagatgaaagtgttaaggctttgttatatatcaatgtcacaagca |
14371555 |
T |
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| Q |
361 |
gtgcttgggttcgaagtccgagtggctgcaacctaaggaact |
402 |
Q |
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| T |
14371554 |
gtgcttggattcgaagtccgagttgctgcaacctaaagaact |
14371513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 248 - 396
Target Start/End: Original strand, 14241653 - 14241802
Alignment:
| Q |
248 |
taccaactcgtt-ggcatcaacagtcatgaaattgattatttctccataagtatggcactgtcttaattgacctgaaagtgttaaggctttattatatat |
346 |
Q |
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||||||||| || |||||||||||| ||||||||||| ||||||||| || | || ||||| || |||||| ||||||||||||||||||||||||||| |
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| T |
14241653 |
taccaactctttcggcatcaacagttatgaaattgataatttctccagaactgtgacactgctttgattgacatgaaagtgttaaggctttattatatat |
14241752 |
T |
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| Q |
347 |
catagtcacaagcagtgcttgggttcgaagtccgagtggctgcaacctaa |
396 |
Q |
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| T |
14241753 |
gatcgtcacaagcagtgcacggattcgaagtcctagttgctgcaacctaa |
14241802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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