View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9658_high_4 (Length: 378)
Name: NF9658_high_4
Description: NF9658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9658_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 34961275 - 34960912
Alignment:
| Q |
1 |
agtcggtcattggactgaatttgaatttccaaaattaaaagagactttacaattccgatacatttagaaatatatcgagtgtctcacacattcaaagatc |
100 |
Q |
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| T |
34961275 |
agtcggtctttggactgaatttgaattttcaaaattaaaagaaactttacaattccaatacatttagaaatatatcgagtgcctcagacattcaaagatc |
34961176 |
T |
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| Q |
101 |
aaaaagattgtttactcgnnnnnnnatcttgggtgttgggtataattgcgtgtttcgcaaacacacgagctaggtgtcattgatgaattgattgtcgttg |
200 |
Q |
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| T |
34961175 |
aaaaagatcgtttactcgtttttttatcttgtgtgttgggtataattgcgtgtttcgcaaacacatgagctaggtgtcattgatgaattgattgtcgttg |
34961076 |
T |
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| Q |
201 |
atgaagattttctgatggagtggatgggagaaattttgtgagagagtaggatggtatggtggagttgagaggatatggctattgttggatgggagagagt |
300 |
Q |
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| T |
34961075 |
atgaagattttctgatggagtggatgggagaaattttgtgagagagtaggatggtatggtggagttgagaggatatggctattgttggatgggagagagt |
34960976 |
T |
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| Q |
301 |
ggggtcctcttatctgttgtgggagatttgtgtccaatgtggaatggttgattggtggtgactg |
364 |
Q |
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| T |
34960975 |
ggggtcctcttatctattgtgggagatttgtgtccaatgtggaatggttgattggtggtgactg |
34960912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 34961583 - 34961452
Alignment:
| Q |
126 |
atcttgggtgttgggtataattgcgtgtttcgcaaacacacgagctaggtgtcattgatgaattgattgtcgttgatgaagattttctgatggagtggat |
225 |
Q |
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| T |
34961583 |
atcttgtgtgttgggtataattacgtgcttcacaaacacgtgagttaggtgtggttgatggcttgattgtcgttaatgaagattttctgaaggagtggat |
34961484 |
T |
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| Q |
226 |
gggagaaattttgtgagagagtaggatggtatgg |
259 |
Q |
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| T |
34961483 |
gggagaga--tggtgagagagtaggatggtatgg |
34961452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 34961642 - 34961597
Alignment:
| Q |
69 |
aatatatcgagtgtctcacacattcaaagatcaaaaagattgttta |
114 |
Q |
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| T |
34961642 |
aatatatccaatgtctcagacattcaaagataaaaaagattgttta |
34961597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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