View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9658_high_5 (Length: 336)

Name: NF9658_high_5
Description: NF9658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9658_high_5
NF9658_high_5
[»] chr5 (16 HSPs)
chr5 (18-336)||(1916233-1916551)
chr5 (32-111)||(10272421-10272501)
chr5 (68-111)||(18704026-18704069)
chr5 (38-136)||(37611180-37611279)
chr5 (38-136)||(37787910-37788009)
chr5 (32-128)||(16889735-16889832)
chr5 (70-146)||(11297149-11297227)
chr5 (68-130)||(13194838-13194900)
chr5 (74-124)||(18700427-18700477)
chr5 (68-141)||(5951928-5952001)
chr5 (32-97)||(18543201-18543266)
chr5 (78-135)||(36578522-36578578)
chr5 (68-136)||(10907415-10907483)
chr5 (73-137)||(14295548-14295612)
chr5 (32-83)||(17368676-17368728)
chr5 (68-136)||(32172690-32172758)
[»] chr3 (10 HSPs)
chr3 (32-136)||(43115056-43115161)
chr3 (39-136)||(37273141-37273239)
chr3 (32-111)||(9279316-9279396)
chr3 (73-133)||(24281089-24281149)
chr3 (73-132)||(31403060-31403119)
chr3 (68-114)||(38318997-38319043)
chr3 (72-136)||(11039304-11039368)
chr3 (68-124)||(20267165-20267221)
chr3 (36-111)||(26542541-26542617)
chr3 (68-136)||(36200133-36200201)
[»] chr6 (15 HSPs)
chr6 (70-128)||(4006753-4006811)
chr6 (68-122)||(33498656-33498710)
chr6 (32-148)||(8147017-8147135)
chr6 (68-122)||(20377899-20377953)
chr6 (68-136)||(2460116-2460184)
chr6 (70-130)||(9027617-9027677)
chr6 (68-111)||(1019600-1019643)
chr6 (68-123)||(9327081-9327136)
chr6 (69-122)||(1669777-1669830)
chr6 (40-112)||(3528811-3528884)
chr6 (100-145)||(7485093-7485138)
chr6 (68-108)||(281841-281881)
chr6 (68-128)||(3155212-3155272)
chr6 (68-132)||(32577955-32578019)
chr6 (68-132)||(34939550-34939614)
[»] chr8 (14 HSPs)
chr8 (32-136)||(28769304-28769409)
chr8 (32-146)||(7714242-7714359)
chr8 (68-122)||(11183582-11183636)
chr8 (39-128)||(30259121-30259211)
chr8 (39-135)||(779027-779124)
chr8 (68-136)||(6950359-6950427)
chr8 (70-130)||(11770982-11771042)
chr8 (70-114)||(37444407-37444451)
chr8 (77-132)||(10693285-10693340)
chr8 (68-148)||(8060706-8060787)
chr8 (69-146)||(2091801-2091880)
chr8 (70-130)||(5069736-5069796)
chr8 (68-136)||(27119894-27119962)
chr8 (68-136)||(30918150-30918217)
[»] chr4 (10 HSPs)
chr4 (31-137)||(2996572-2996679)
chr4 (68-136)||(27123317-27123385)
chr4 (32-136)||(50799995-50800099)
chr4 (68-111)||(2592299-2592342)
chr4 (68-122)||(3176083-3176137)
chr4 (39-111)||(53673648-53673721)
chr4 (72-136)||(2841667-2841731)
chr4 (78-130)||(4193713-4193765)
chr4 (39-122)||(18011878-18011962)
chr4 (32-91)||(49219139-49219199)
[»] chr2 (7 HSPs)
chr2 (68-147)||(43456659-43456740)
chr2 (32-93)||(11513898-11513960)
chr2 (32-112)||(29316764-29316845)
chr2 (68-146)||(41809198-41809278)
chr2 (69-122)||(43065429-43065482)
chr2 (39-122)||(3067358-3067442)
chr2 (70-130)||(44606081-44606141)
[»] chr1 (12 HSPs)
chr1 (70-148)||(38867784-38867862)
chr1 (69-136)||(15581292-15581359)
chr1 (68-122)||(15579519-15579573)
chr1 (68-122)||(43029381-43029435)
chr1 (35-112)||(45205071-45205149)
chr1 (68-146)||(17420240-17420320)
chr1 (25-121)||(17628592-17628689)
chr1 (99-136)||(24338650-24338687)
chr1 (51-91)||(5082853-5082893)
chr1 (32-91)||(7137008-7137068)
chr1 (32-91)||(12564509-12564569)
chr1 (32-91)||(14629976-14630036)
[»] chr7 (7 HSPs)
chr7 (70-129)||(6601406-6601465)
chr7 (69-136)||(12242282-12242349)
chr7 (31-97)||(24363605-24363672)
chr7 (68-105)||(39281006-39281043)
chr7 (70-147)||(46281094-46281171)
chr7 (68-136)||(34754775-34754843)
chr7 (70-122)||(46082075-46082127)
[»] scaffold0311 (1 HSPs)
scaffold0311 (68-136)||(10582-10650)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 1916233 - 1916551
Alignment:
Q  18 gttcatgtatagattataagttgttttcatgaactatcttggagattttaggaaataagctgaaaataacttatagacatattataagttgttttcacaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1916233 gttcatgtatagattataagttgttttcatgaactatcttggagattttaggaaataagctgaaaataacttatagatatattataagttgttttcacaa 1916332  T
Q  118 gctctttcaaacaatctcaagtgtttatgtcggtattccaatacgtcaatccaaacatgcacttaaacaaccaacttacaaacgcccaggccatgatatc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1916333 gctctttcaaacaatctcaagtgtttatgtcggtattccaatacgtcaatccaaacatgcacttaaacaaccaacttacaaacgcccaggccatgatatc 1916432  T
Q  218 ctttcaaaatgtttgcagctggaaactttacttcactatcatttaacttgcttgcttctgtcagttcatcttataatcaaatacagtatacataccaagt 317  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  1916433 ctttcaaaatgtttgcagctggaaactttatttcactatcatttaacttgcttgcttctgtcagttcatcttcaaatcaaatacagtatacataccaagt 1916532  T
Q  318 gaaatgatagctcatcttc 336  Q
    |||||||||||||||||||    
T  1916533 gaaatgatagctcatcttc 1916551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 10272501 - 10272421
Alignment:
Q  32 tataagttgttttcatgaactatcttggagattttaggaaa-taagctgaaaataacttatagacatattataagttgttt 111  Q
    |||||||||||||||| | | |||||||||| |||| |||| ||||||||||| |||||| |||||| | |||||||||||    
T  10272501 tataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaacaacttacagacatgtcataagttgttt 10272421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 18704069 - 18704026
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttt 111  Q
    |||||||||||||||| ||||||||||||| |||||||||||||    
T  18704069 ggaaataagctgaaaacaacttatagacatgttataagttgttt 18704026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 37611279 - 37611180
Alignment:
Q  38 ttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    |||||||||| | ||||||||||||  ||| |||||||| ||||||| | |||||  |||| | | |||||||||||| ||||||| |||||||||||||    
T  37611279 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctca 37611180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 37788009 - 37787910
Alignment:
Q  38 ttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    |||||||||| | ||||||||||||  ||| |||||||| ||||||| | |||||  |||| | | |||||||||||| ||||||| |||||||||||||    
T  37788009 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctca 37787910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 16889735 - 16889832
Alignment:
Q  32 tataagttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaa 128  Q
    |||||| ||||||||| | ||||  | |||| |||| |||||||| ||||||| |||||||||||||| |||||| |||||||| || ||||| ||||    
T  16889735 tataagctgttttcataagctatgctagagagtttatggaaataatctgaaaacaacttatagacatagtataagctgttttcataatctcttccaaa 16889832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 11297227 - 11297149
Alignment:
Q  70 aaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatct--caagtgtttatg 146  Q
    |||||||||||||||| || || ||||| |  |||||||||| || ||||||||||||||| |||  ||||||||||||    
T  11297227 aaataagctgaaaatagctaattgacatgtcttaagttgtttccataagctctttcaaacagtcttacaagtgtttatg 11297149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 13194838 - 13194900
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaaca 130  Q
    ||||||||||| |||| ||| ||| ||||| ||||||| | |||||||||||||| |||||||    
T  13194838 ggaaataagctaaaaacaacatatggacatgttataagcttttttcacaagctctgtcaaaca 13194900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 18700427 - 18700477
Alignment:
Q  74 aagctgaaaataacttatagacatattataagttgttttcacaagctcttt 124  Q
    |||||||||| ||||||||||||| | ||||||||||| || |||||||||    
T  18700427 aagctgaaaacaacttatagacatgtcataagttgtttccataagctcttt 18700477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 5952001 - 5951928
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctcaagtgt 141  Q
    |||||||||||||||| ||||||||| | ||| |||||||| || || ||||||| | ||||| ||||| ||||    
T  5952001 ggaaataagctgaaaacaacttatagccctatcataagttgcttccataagctctctgaaacagtctcatgtgt 5951928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 18543266 - 18543201
Alignment:
Q  32 tataagttgttttcatgaactatcttggagattttaggaaataagctgaaaataacttatagacat 97  Q
    |||||||||||||||| | ||||| ||||||  ||| ||||||||||||||| |||| || |||||    
T  18543266 tataagttgttttcataagctatcctggagagcttatgaaataagctgaaaacaactcatggacat 18543201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 36578522 - 36578578
Alignment:
Q  78 tgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctc 135  Q
    ||||||||||| ||| ||||||||||||||||||||| || ||||  |||||||||||    
T  36578522 tgaaaataactaataaacatattataagttgttttcataa-ctctcgcaaacaatctc 36578578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 10907415 - 10907483
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    |||||||||| ||||| | ||||| |||||   |||||||||||||| |||||||| |||||| |||||    
T  10907415 ggaaataagccgaaaacagcttattgacatgacataagttgttttcataagctcttccaaacagtctca 10907483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 14295548 - 14295612
Alignment:
Q  73 taagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctcaa 137  Q
    ||||||||||| | ||||| ||||||| ||||| |||||||| ||||||| ||| ||| ||||||    
T  14295548 taagctgaaaacagcttatcgacatatcataagctgttttcataagctctctcagacagtctcaa 14295612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 17368676 - 17368728
Alignment:
Q  32 tataagttgttttcatgaactatcttggagatttta-ggaaataagctgaaaa 83  Q
    |||||||||||||||| | ||||||||||||  ||| ||||||||||||||||    
T  17368676 tataagttgttttcataagctatcttggagaggttatggaaataagctgaaaa 17368728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 32172690 - 32172758
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    |||||||||||||||||  ||||| ||||| | ||||||||||| || |||||||  ||||| ||||||    
T  32172690 ggaaataagctgaaaatggcttatggacatgtcataagttgtttccataagctctcccaaactatctca 32172758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 43115056 - 43115161
Alignment:
Q  32 tataagttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaaca 130  Q
    |||||||||||||||||||||||| | ||||  ||| |||||||||||||||| || |||| ||||| | ||||||||||| || || ||||| ||||||    
T  43115056 tataagttgttttcatgaactatcattgagagcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaaca 43115155  T
Q  131 atctca 136  Q
    ||||||    
T  43115156 atctca 43115161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 37273141 - 37273239
Alignment:
Q  39 tgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    ||||||||| | ||||||||||||  ||| ||||||||| |||||| ||||||| ||||| | ||||||||||| || |||||||  |||||| |||||    
T  37273141 tgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctca 37273239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 9279396 - 9279316
Alignment:
Q  32 tataagttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgttt 111  Q
    |||| ||||||||||| ||||||| || ||| |||| |||||||||||||||| | |||||| |||| ||||||| |||||    
T  9279396 tatatgttgttttcataaactatcatgaagagtttaaggaaataagctgaaaacagcttatatacatgttataagctgttt 9279316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 24281089 - 24281149
Alignment:
Q  73 taagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatc 133  Q
    |||| |||||| ||||||| || |||| |||||||||||||| ||||||| ||||||||||    
T  24281089 taagttgaaaacaacttatggagatatcataagttgttttcataagctctctcaaacaatc 24281149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 31403060 - 31403119
Alignment:
Q  73 taagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaat 132  Q
    |||||| |||||| ||||||||||| | ||||||||||| || ||||||| |||||||||    
T  31403060 taagcttaaaataccttatagacatgtaataagttgtttccataagctctctcaaacaat 31403119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 38318997 - 38319043
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttca 114  Q
    |||||||||||||||||| |||||  |||| ||||||||||||||||    
T  38318997 ggaaataagctgaaaatagcttatgaacatgttataagttgttttca 38319043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 11039368 - 11039304
Alignment:
Q  72 ataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    |||||||||||| ||||||| ||||| | ||||  ||||| || ||||||||||||||| |||||    
T  11039368 ataagctgaaaacaacttatggacatgtcataatatgtttccataagctctttcaaacagtctca 11039304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 20267165 - 20267221
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctcttt 124  Q
    |||||||||||||||| ||||||   |||| ||||||||||||| |||| |||||||    
T  20267165 ggaaataagctgaaaacaacttaccaacatgttataagttgtttccacatgctcttt 20267221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 26542541 - 26542617
Alignment:
Q  36 agttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgttt 111  Q
    |||| ||||||| | ||||  |||||| |||| ||||||||| |||||| || |||||||||||| |||||||||||    
T  26542541 agttattttcataagctattatggagagtttatggaaataagttgaaaacaagttatagacatatcataagttgttt 26542617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 36200133 - 36200201
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    |||||||||||||||| ||||||| ||||| | ||||||||||| || || |||| || |||| |||||    
T  36200133 ggaaataagctgaaaacaacttatggacatgtcataagttgtttacaaaaactctctccaacattctca 36200201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 4006753 - 4006811
Alignment:
Q  70 aaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaa 128  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||||||||| ||||    
T  4006753 aaataagctgaaaataacttatggacatatcgtaagttgttttcacaagctcttccaaa 4006811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 33498656 - 33498710
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctct 122  Q
    |||||||||||||||||||| ||||||||| | |||||||||||||| |||||||    
T  33498656 ggaaataagctgaaaataacctatagacatgtcataagttgttttcataagctct 33498710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 8147135 - 8147017
Alignment:
Q  32 tataagttgttttcatgaactatcttggagattttaggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaa 131  Q
    |||||| |||||||||||| | |||||||||  ||| | | |||| |||||||| |||||  | || |||||||||||||||| ||||||||| |||||     
T  8147135 tataagctgttttcatgaattgtcttggagagcttatggagtaagttgaaaatagcttatgcatatgttataagttgttttcataagctctttgaaacag 8147036  T
Q  132 tct--caagtgtttatgtc 148  Q
    |||  |||||| |||||||    
T  8147035 tctaacaagtggttatgtc 8147017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 20377953 - 20377899
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctct 122  Q
    |||||||||| ||||| ||||||||||||| | |||||||||||||| |||||||    
T  20377953 ggaaataagccgaaaacaacttatagacatgtcataagttgttttcataagctct 20377899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 2460184 - 2460116
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    ||||||||| |||||| |||||| |||||| | ||||||||||| || ||||||| ||||||| |||||    
T  2460184 ggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctca 2460116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 9027617 - 9027677
Alignment:
Q  70 aaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaaca 130  Q
    |||||||||||||| ||||||| ||||| | ||||||| ||| || |||||||||||||||    
T  9027617 aaataagctgaaaacaacttatggacatgtcataagttatttccataagctctttcaaaca 9027677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 1019643 - 1019600
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttt 111  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||    
T  1019643 ggaaataagctaaaaacaacttatagacatgttataagttgttt 1019600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 9327081 - 9327136
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctt 123  Q
    ||||||| | ||||||||||| |||||||||| ||||||||||| ||||| |||||    
T  9327081 ggaaatacgttgaaaataactcatagacatatcataagttgtttccacaaactctt 9327136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 1669830 - 1669777
Alignment:
Q  69 gaaataagctgaaaataacttatagacatattataagttgttttcacaagctct 122  Q
    ||||| ||||||||| | ||||||||||| | |||||||||||||| |||||||    
T  1669830 gaaatgagctgaaaacagcttatagacatgtcataagttgttttcataagctct 1669777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 3528811 - 3528884
Alignment:
Q  40 gttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgtttt 112  Q
    |||||||||||||||||||||||  ||| | ||||||| |||||| || |||| ||||| | ||||||||||||    
T  3528811 gttttcatgaactatcttggagagcttatgaaaataagatgaaaacaagttatggacatgtcataagttgtttt 3528884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 7485138 - 7485093
Alignment:
Q  100 tataagttgttttcacaagctctttcaaacaatctcaagtgtttat 145  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||    
T  7485138 tataagttgttttcataagctctctcaaacagcctcaagtgtttat 7485093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 281881 - 281841
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttg 108  Q
    |||||||||||||||| ||||||||||||| | ||||||||    
T  281881 ggaaataagctgaaaacaacttatagacatgtcataagttg 281841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 3155212 - 3155272
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaa 128  Q
    |||||||||||||||| | ||||||||||| | ||||||||| |  | |||||||||||||    
T  3155212 ggaaataagctgaaaacagcttatagacatgtcataagttgtgtatataagctctttcaaa 3155272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 32578019 - 32577955
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaat 132  Q
    |||||||||||||||| | || |  ||||| | |||||||||||||| ||||||| |||||||||    
T  32578019 ggaaataagctgaaaacagctcaaggacatgtcataagttgttttcataagctctctcaaacaat 32577955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 34939550 - 34939614
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaat 132  Q
    |||||||||||||||| ||||||  ||| | | ||||||||||| || ||||||| |||||||||    
T  34939550 ggaaataagctgaaaacaacttacggacgtgtcataagttgtttccataagctctctcaaacaat 34939614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 28769409 - 28769304
Alignment:
Q  32 tataagttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaaca 130  Q
    |||||| ||||||||| | |||| ||||||| |||| |||||||||||||||| ||||||| ||||||| ||| | | ||| |||||||||| ||||| |    
T  28769409 tataagctgttttcataagctattttggagagtttatggaaataagctgaaaacaacttatggacatatcatatgctatttacacaagctctctcaaata 28769310  T
Q  131 atctca 136  Q
    ||||||    
T  28769309 atctca 28769304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 7714242 - 7714359
Alignment:
Q  32 tataagttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaaca 130  Q
    |||||||||||||||||| ||||||||||||  | | | ||||||| |||||| | || || ||||| | ||||||||||| |||||||| || ||||||    
T  7714242 tataagttgttttcatgagctatcttggagagctcatgaaaataagttgaaaacagctcatcgacatttcataagttgtttccacaagcttttccaaaca 7714341  T
Q  131 atct--caagtgtttatg 146  Q
     |||  ||||||||||||    
T  7714342 gtctcacaagtgtttatg 7714359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 11183582 - 11183636
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctct 122  Q
    |||||||||||||||| | ||||||||||||| |||||||||||| | |||||||    
T  11183582 ggaaataagctgaaaacagcttatagacatatcataagttgtttttataagctct 11183636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 30259121 - 30259211
Alignment:
Q  39 tgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaa 128  Q
    |||||| || || |||||||||||  ||| |||||||| ||||||| ||||||||||||||| ||||| ||||| || ||||||| |||||    
T  30259121 tgtttttataaattatcttggagaacttatggaaataaactgaaaacaacttatagacatatcataagctgtttccataagctctctcaaa 30259211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 779124 - 779027
Alignment:
Q  39 tgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctc 135  Q
    ||||||||| |||||||||||||| | ||   ||||||| |||||| |||||||  |||| | |||||||||||||  ||| ||||||||||||||||    
T  779124 tgttttcataaactatcttggagagtgtaccaaaataagatgaaaacaacttatgaacatgtcataagttgttttcgtaagttctttcaaacaatctc 779027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 6950359 - 6950427
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    |||||||||||||||| ||||||| ||||| | ||| ||||||| || |||||||  ||||||||||||    
T  6950359 ggaaataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaacaatctca 6950427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 11771042 - 11770982
Alignment:
Q  70 aaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaaca 130  Q
    ||||||| |||||| ||| ||||||||||| |||||||||||||| ||| ||||| |||||    
T  11771042 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaaca 11770982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 37444451 - 37444407
Alignment:
Q  70 aaataagctgaaaataacttatagacatattataagttgttttca 114  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||||    
T  37444451 aaataagctgaaaataacttataaacatgttaaaagttgttttca 37444407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 10693285 - 10693340
Alignment:
Q  77 ctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaat 132  Q
    |||||||||| ||| | |||||| |||||||||||||| | |||||||||||||||    
T  10693285 ctgaaaataagttacaaacatatcataagttgttttcatatgctctttcaaacaat 10693340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 8060706 - 8060787
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctc-aagtgtttatgtc 148  Q
    ||||||||||||||||||||||||  || |   |||| ||||||||| ||||||| ||||||| | || |||||||||||||    
T  8060706 ggaaataagctgaaaataacttatgaactttccataatttgttttcataagctctctcaaacagtttcgaagtgtttatgtc 8060787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 2091801 - 2091880
Alignment:
Q  69 gaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatct--caagtgtttatg 146  Q
    |||||||| |||||| ||||||| || |||| ||||||||||||    |||||| |||||||||||  ||||||||||||    
T  2091801 gaaataagttgaaaacaacttatggatatatcataagttgtttttgtgagctctctcaaacaatctcacaagtgtttatg 2091880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 5069736 - 5069796
Alignment:
Q  70 aaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaaca 130  Q
    ||||||||||||||| ||||||  |||| ||||||| ||||| || ||||||| |||||||    
T  5069736 aaataagctgaaaatgacttatgaacatgttataagatgtttccataagctctctcaaaca 5069796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 27119962 - 27119894
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    |||||||||||||||| ||||||||||||| | || ||| ||||||| ||| | || |||||| |||||    
T  27119962 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctca 27119894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 30918150 - 30918217
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    |||||||||||||||| ||||||| || || | | |||||||||||| ||||||| ||||||| |||||    
T  30918150 ggaaataagctgaaaacaacttat-gaaatgtcacaagttgttttcataagctctctcaaacagtctca 30918217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 2996572 - 2996679
Alignment:
Q  31 ttataagttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaac 129  Q
    ||||||||||||||||| | ||||||||||||   || | ||||||| |||||| | ||||| ||||| | |||||||||||||| ||||||| ||||||    
T  2996572 ttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaac 2996671  T
Q  130 aatctcaa 137  Q
    | ||||||    
T  2996672 agtctcaa 2996679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 27123385 - 27123317
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    ||||||||| |||||| |||||| |||||| | ||||||||||| || ||||||| ||||||| |||||    
T  27123385 ggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctca 27123317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 50800099 - 50799995
Alignment:
Q  32 tataagttgttttcatgaactatcttggagattttaggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaa 131  Q
    |||||| ||||||| | | ||||| ||||||  || |||||||||||||||| | ||||||||||| | ||||||||||| ||  || |||  |||||||    
T  50800099 tataagctgttttcttaagctatcatggagaactttggaaataagctgaaaacagcttatagacatgtcataagttgtttacattagttctcccaaacaa 50800000  T
Q  132 tctca 136  Q
    |||||    
T  50799999 tctca 50799995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 2592342 - 2592299
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttt 111  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||    
T  2592342 ggaaataagctgaaaacaacttacagacacattataagttgttt 2592299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 3176137 - 3176083
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctct 122  Q
    |||||||||||||||| |||||||||||||   ||||| |||||||| |||||||    
T  3176137 ggaaataagctgaaaacaacttatagacatgacataagatgttttcataagctct 3176083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 53673721 - 53673648
Alignment:
Q  39 tgttttcatgaactatcttggagattttagg-aaataagctgaaaataacttatagacatattataagttgttt 111  Q
    ||||||||| | ||||||||||||  ||| | |||||||||||||| ||||||| ||||||| ||| |||||||    
T  53673721 tgttttcataagctatcttggagagcttatgtaaataagctgaaaacaacttatggacatatgatatgttgttt 53673648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 2841667 - 2841731
Alignment:
Q  72 ataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    |||||||||||| ||||||| ||||| | |||||||| ||||| || ||||  ||||||||||||    
T  2841667 ataagctgaaaacaacttattgacatgtcataagttgctttcataaactctcgcaaacaatctca 2841731  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 4193713 - 4193765
Alignment:
Q  78 tgaaaataacttatagacatattataagttgttttcacaagctctttcaaaca 130  Q
    ||||||||||||||  ||| || ||||| |||||||||||||||| |||||||    
T  4193713 tgaaaataacttattaacacatcataagctgttttcacaagctctctcaaaca 4193765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 18011878 - 18011962
Alignment:
Q  39 tgttttcatgaactatcttggagattttaggaaa-taagctgaaaataacttatagacatattataagttgttttcacaagctct 122  Q
    ||||||||| | |||||||| ||| |||| |||| |||||| ||||   |||||| |||||||||||| |||||||| |||||||    
T  18011878 tgttttcataagctatcttgaagagtttatgaaaataagctaaaaacggcttatatacatattataagctgttttcataagctct 18011962  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 49219139 - 49219199
Alignment:
Q  32 tataagttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttat 91  Q
    |||||||||||||||| |||||||||  |||  ||| |||||||||||||||| |||||||    
T  49219139 tataagttgttttcataaactatcttaaagagattatggaaataagctgaaaacaacttat 49219199  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 43456740 - 43456659
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatct--caagtgtttatgt 147  Q
    |||||||||||||||| |  |||| ||||| | || ||||||||||||||||||||||||||| |||  |||||||||||||    
T  43456740 ggaaataagctgaaaacagtttatggacatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgt 43456659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 11513898 - 11513960
Alignment:
Q  32 tataagttgttttcatgaactatcttggagat-tttaggaaataagctgaaaataacttatag 93  Q
    |||||||||||||||| | ||||| ||||||  ||| |||||||||||||||||| |||||||    
T  11513898 tataagttgttttcataagctatcatggagaacttttggaaataagctgaaaatagcttatag 11513960  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 29316845 - 29316764
Alignment:
Q  32 tataagttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgtttt 112  Q
    |||||| ||||||||| | ||||||||||||  ||| |||||||||||||||| |||||||  |||| | ||||| ||||||    
T  29316845 tataagctgttttcatcagctatcttggagaacttatggaaataagctgaaaagaacttatgaacatgtcataagctgtttt 29316764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 41809278 - 41809198
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatct--caagtgtttatg 146  Q
    ||||||||||| |||| |||||||  |||| | ||||||||||| ||||||||||| ||| || |||  ||||||||||||    
T  41809278 ggaaataagctaaaaacaacttatgaacatgtcataagttgtttccacaagctcttacaatcagtctcacaagtgtttatg 41809198  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 43065482 - 43065429
Alignment:
Q  69 gaaataagctgaaaataacttatagacatattataagttgttttcacaagctct 122  Q
    ||||||||||||||| || |||| ||||| | |||||||||||||| |||||||    
T  43065482 gaaataagctgaaaacaatttatggacatgtcataagttgttttcataagctct 43065429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 3067442 - 3067358
Alignment:
Q  39 tgttttcatgaactatcttggagattttaggaaa-taagctgaaaataacttatagacatattataagttgttttcacaagctct 122  Q
    ||||||||| | |||||||| ||| |||| |||| |||||| ||||   |||||| |||||||||||| |||||||| |||||||    
T  3067442 tgttttcataagctatcttgaagagtttatgaaaataagctaaaaacggcttatatacatattataagctgttttcataagctct 3067358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 44606141 - 44606081
Alignment:
Q  70 aaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaaca 130  Q
    |||| ||||||||| ||||||| ||||| | |||||||||||||| ||| |||| ||||||    
T  44606141 aaatcagctgaaaacaacttatggacatgtcataagttgttttcataagttcttccaaaca 44606081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 38867862 - 38867784
Alignment:
Q  70 aaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctcaagtgtttatgtc 148  Q
    ||||||||| |||| |||| || ||||||| ||||||| ||| || ||||||| ||||||| || ||||||||||||||    
T  38867862 aaataagctaaaaacaactgatggacatatcataagttatttccataagctctctcaaacagtcacaagtgtttatgtc 38867784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 15581292 - 15581359
Alignment:
Q  69 gaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    |||||| |||||||| | ||||||||||| | ||||||||||| ||  ||||||| ||||||||||||    
T  15581292 gaaataggctgaaaacagcttatagacatgtcataagttgtttccattagctcttccaaacaatctca 15581359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 15579519 - 15579573
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctct 122  Q
    ||||||||||||| || ||||||| ||||| | ||||||||||| ||||||||||    
T  15579519 ggaaataagctgagaacaacttatggacatgtcataagttgtttccacaagctct 15579573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 43029435 - 43029381
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctct 122  Q
    |||||||||||||||||| ||||||||||| | ||||  |||||||| |||||||    
T  43029435 ggaaataagctgaaaatagcttatagacatgtaataaactgttttcataagctct 43029381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 45205071 - 45205149
Alignment:
Q  35 aagttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacatattataagttgtttt 112  Q
    ||||||||||||| | ||||| || ||| || | |||||||||||||||| ||||||  ||||||| ||||||||||||    
T  45205071 aagttgttttcataagctatcatgtagagttcatggaaataagctgaaaacaacttagggacatatcataagttgtttt 45205149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 17420240 - 17420320
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatct--caagtgtttatg 146  Q
    ||||||||| |||||| || |||| ||||| | |||||||||||||| ||||||||  ||||| |||  ||||||||||||    
T  17420240 ggaaataagttgaaaacaatttatggacatgtaataagttgttttcataagctcttcaaaacagtctaacaagtgtttatg 17420320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 17628592 - 17628689
Alignment:
Q  25 tatagattataagttgttttcatgaactatcttggagat-tttaggaaataagctgaaaataacttatagacatattataagttgttttcacaagctc 121  Q
    |||| |||||||| |||||| || |||||| |||||| | ||| ||||||| |||||||| | ||||| ||||| | ||||||||||| || ||||||    
T  17628592 tataaattataagctgtttttattaactattttggaggtcttttggaaatatgctgaaaacagcttatggacatgtcataagttgtttccataagctc 17628689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 24338687 - 24338650
Alignment:
Q  99 ttataagttgttttcacaagctctttcaaacaatctca 136  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  24338687 ttataagttgttttcacaagttcttttaaacaatctca 24338650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 5082853 - 5082893
Alignment:
Q  51 ctatcttggagattttaggaaataagctgaaaataacttat 91  Q
    |||||||| ||||||| | ||||||||||||||||||||||    
T  5082853 ctatcttgaagattttcgaaaataagctgaaaataacttat 5082893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 7137068 - 7137008
Alignment:
Q  32 tataagttgttttcatgaactatcttggagattttaggaaa-taagctgaaaataacttat 91  Q
    |||||| ||||||||| | ||||||||||||  ||| |||| |||||||||||||||||||    
T  7137068 tataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttat 7137008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 12564569 - 12564509
Alignment:
Q  32 tataagttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttat 91  Q
    |||| ||||||||||| | ||||||||||||  ||| |||||||||||||||| |||||||    
T  12564569 tataggttgttttcataagctatcttggagaacttatggaaataagctgaaaacaacttat 12564509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 14630036 - 14629976
Alignment:
Q  32 tataagttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttat 91  Q
    |||||| | ||||||| | |||||||||||| |||| |||||||||||||||| |||||||    
T  14630036 tataagctattttcataagctatcttggagactttatggaaataagctgaaaacaacttat 14629976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 6601406 - 6601465
Alignment:
Q  70 aaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaac 129  Q
    ||||||||||| |||| ||||| ||||| |||||| ||||||||| ||| ||||||||||    
T  6601406 aaataagctgagaatagcttatggacattttataatttgttttcataagttctttcaaac 6601465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 12242282 - 12242349
Alignment:
Q  69 gaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    ||||||||||||||| ||||||||| ||||| |||||  |||| || ||||||| ||||||| |||||    
T  12242282 gaaataagctgaaaacaacttataggcatatcataagccgtttgcataagctctctcaaacagtctca 12242349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 24363672 - 24363605
Alignment:
Q  31 ttataagttgttttcatgaactatcttggagatttta-ggaaataagctgaaaataacttatagacat 97  Q
    ||||||||||||||||| | ||||| ||||||  ||| |||||||||||||||| ||||||| |||||    
T  24363672 ttataagttgttttcataagctatcctggagaggttatggaaataagctgaaaacaacttatggacat 24363605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 39281006 - 39281043
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataag 105  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  39281006 ggaaataagctgaaaacaacttatggacatattataag 39281043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 46281171 - 46281094
Alignment:
Q  70 aaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctcaagtgtttatgt 147  Q
    |||||||||||||| || ||||||||||   ||||||||||| |  || |||||||||||| ||  ||||||||||||    
T  46281171 aaataagctgaaaacaatttatagacatggcataagttgtttccgtaaactctttcaaacactcaaaagtgtttatgt 46281094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 34754843 - 34754775
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    |||||||||||||||| ||||||||| | | | ||||| |||||||  ||||||| ||||||| |||||    
T  34754843 ggaaataagctgaaaacaacttataggcttgtcataagatgttttcttaagctctctcaaacagtctca 34754775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 46082075 - 46082127
Alignment:
Q  70 aaataagctgaaaataacttatagacatattataagttgttttcacaagctct 122  Q
    |||||||||||||| ||||||| | ||| | |||||||||||||| |||||||    
T  46082075 aaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctct 46082127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 10650 - 10582
Alignment:
Q  68 ggaaataagctgaaaataacttatagacatattataagttgttttcacaagctctttcaaacaatctca 136  Q
    |||||||||||||||| ||||||| ||||| | || |||||||| || ||||| | ||||||| |||||    
T  10650 ggaaataagctgaaaacaacttatggacatgtcattagttgtttacataagctttgtcaaacagtctca 10582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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