View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9658_high_7 (Length: 305)
Name: NF9658_high_7
Description: NF9658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9658_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 45477243 - 45476979
Alignment:
| Q |
18 |
atgatatgctatgccatgaaccctaatgtgctggttctatattttatgaatgaatgaattggtggtgtgtcatatagcgcaacctcattgttatatatat |
117 |
Q |
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| T |
45477243 |
atgatatgctatgccatgaaccct---gtgctggttctatattttatgaatgaatgaattggtggtgtgtcatatagtgcaacctcattgttatatatat |
45477147 |
T |
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| Q |
118 |
agggagtgatagaggatgtgtttggtgtctgnnnnnnnaaatgtgatgtagaatttctttttacaatgataattaaatatataaagaattggaaaaatgt |
217 |
Q |
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||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45477146 |
agggagtgatagaggatgtgtttggtgtctgtttttttaagtgtg--gtagaatttctttttacaatgataattaaatatataaagaattggaaaaatgt |
45477049 |
T |
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| Q |
218 |
atcattnnnnnnngtggaaatattacacttgagtccaaatcttaattaaaaagcacataggtctctcttt |
287 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45477048 |
atcattaaaaaaaatggaaatattacacttgagtccaaatcttaattaaaaagcacatatgtctctcttt |
45476979 |
T |
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