View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9658_high_9 (Length: 223)

Name: NF9658_high_9
Description: NF9658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9658_high_9
NF9658_high_9
[»] chr4 (13 HSPs)
chr4 (1-223)||(31150380-31150602)
chr4 (29-205)||(31161692-31161868)
chr4 (95-214)||(31476882-31477001)
chr4 (3-219)||(31159285-31159501)
chr4 (13-219)||(31019836-31020042)
chr4 (6-219)||(31489497-31489710)
chr4 (13-209)||(31029727-31029923)
chr4 (125-219)||(31496865-31496959)
chr4 (126-214)||(31502035-31502123)
chr4 (25-217)||(31528447-31528639)
chr4 (30-135)||(31034102-31034207)
chr4 (7-216)||(31482645-31482854)
chr4 (124-219)||(31245022-31245117)
[»] chr2 (1 HSPs)
chr2 (89-216)||(17438730-17438857)
[»] chr6 (12 HSPs)
chr6 (89-218)||(33642504-33642633)
chr6 (89-217)||(31560711-31560839)
chr6 (89-218)||(33059612-33059741)
chr6 (89-217)||(33273842-33273970)
chr6 (89-216)||(31567030-31567157)
chr6 (89-215)||(9168826-9168952)
chr6 (89-217)||(33306536-33306664)
chr6 (95-215)||(33390124-33390244)
chr6 (89-217)||(33402664-33402792)
chr6 (126-217)||(33264699-33264790)
chr6 (126-217)||(33412003-33412094)
chr6 (89-218)||(33360128-33360257)
[»] scaffold1749 (1 HSPs)
scaffold1749 (139-217)||(49-127)
[»] scaffold0428 (1 HSPs)
scaffold0428 (139-217)||(8810-8888)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31150602 - 31150380
Alignment:
Q  1 aataaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150602 aataaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttag 31150503  T
Q  101 tcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150502 tcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagg 31150403  T
Q  201 gaagacaacccttgctactattc 223  Q
    |||||||||||||||||||||||    
T  31150402 gaagacaacccttgctactattc 31150380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 31161868 - 31161692
Alignment:
Q  29 agattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaatt 128  Q
    |||||||||||||||| ||||| ||| | |||||  |||||||||||| | | | |||||||||  ||||||  |||||| |||||| |  | | |||||    
T  31161868 agattgaaaagatcgtcgaagaaattatgaatatactgggttacaagtctacaagtcttccaaattatttagctgggatggattctcttacagaagaatt 31161769  T
Q  129 agaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaaga 205  Q
    ||||||||||||||||||||| ||| |||||||||| || ||||||||| ||||||||||||||||| |||||||||    
T  31161768 agaaaaacatttacttttggattcggttgatgatgtgcgggttgtaggagtttgtgggatgggtggaatagggaaga 31161692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 31476882 - 31477001
Alignment:
Q  95 atttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtgg 194  Q
    ||||||| |||||| ||||||||  ||| ||||||||||| | |||||||||||||||  |||||||||| | |||||||||||||||||||||||||||    
T  31476882 atttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgatgttcatgttgtaggaatttgtgggatgggtgg 31476981  T
Q  195 agtagggaagacaacccttg 214  Q
    | ||||||||||||||||||    
T  31476982 aatagggaagacaacccttg 31477001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 31159501 - 31159285
Alignment:
Q  3 taaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtc 102  Q
    |||||||| |||||| ||| ||||||||||||||||||| |||||||||||    ||||| | |||| |||| |||||   |||||||||| | |||||     
T  31159501 taaaactttcaggcctcaatatgcagagattgaaaagattgttgaagagataacgaatatatcgggtcacaaattttcatgtcttccaaaagaattagtt 31159402  T
Q  103 gggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtaggga 202  Q
    || ||  ||| |||| || |  || ||| ||| |  ||||||||||||||  |||||||||| || ||||||||||||||||||||||||||| ||||||    
T  31159401 ggaataaattatcctatagaaaaagtagcaaatctattacttttggactccgttgatgatgttcgggttgtaggaatttgtgggatgggtggaataggga 31159302  T
Q  203 agacaacccttgctact 219  Q
    ||||||| ||| |||||    
T  31159301 agacaactcttactact 31159285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 31020042 - 31019836
Alignment:
Q  13 aggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcatt 112  Q
    ||||| ||| |||| |||||| ||||||| |||||||||||  | ||||| |||||| |||| |||||   |||||||||| |  |||| || ||| ||     
T  31020042 aggcctcaatatgctgagattaaaaagattgttgaagagatattgaatatattgggtcacaacttttcatctcttccaaaagaactagttggtatgaatc 31019943  T
Q  113 ctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaaccct 212  Q
    ||| | || |  || ||| ||| |  ||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||||||||||| ||    
T  31019942 ctcatatagaaaaagtagtaaatctattacttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactct 31019843  T
Q  213 tgctact 219  Q
     ||||||    
T  31019842 ggctact 31019836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 219
Target Start/End: Original strand, 31489497 - 31489710
Alignment:
Q  6 aacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcggg 105  Q
    ||||| |||||| ||| ||| ||||||| ||||||| ||||| |||||  | ||||| |||||| |||| | |||   |||||||||| |  |||| ||     
T  31489497 aactttcaggcctcaatatgaagagattaaaaagattgttgacgagatattgaatatattgggtcacaattattcatctcttccaaaagaactagttggt 31489596  T
Q  106 atgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaaga 205  Q
    ||| |||||| | || || || ||| ||| |  ||||||||||||||  |||||||||| || ||||||||||||||||||||||||||| |||||||||    
T  31489597 atgaattctcatatagataaagtagcaaatctattacttttggactccattgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaaga 31489696  T
Q  206 caacccttgctact 219  Q
    |||| || ||||||    
T  31489697 caactctggctact 31489710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 31029923 - 31029727
Alignment:
Q  13 aggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcatt 112  Q
    ||||| ||| |||| |||||| ||||||| |||||||||||  | ||||| |||||| |||| |||||   |||||||||| |  |||| || ||| ||     
T  31029923 aggcctcaatatgctgagattaaaaagattgttgaagagatattgaatatattgggtcacaacttttcatctcttccaaaagaactagttggtatgaatc 31029824  T
Q  113 ctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaac 209  Q
    ||| | || |  || ||| ||| |  ||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||||||||||    
T  31029823 ctcatatagaaaaagtagtaaatctattacttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaac 31029727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 31496865 - 31496959
Alignment:
Q  125 aattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgctact 219  Q
    |||||||||| | |||||||||||||||| || ||||||  |||||  ||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  31496865 aattagaaaagcttttacttttggactcggttaatgatggtcgtgtcataggaatttgtgggatgggaggaatagggaagactacccttgctact 31496959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 31502035 - 31502123
Alignment:
Q  126 attagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttg 214  Q
    ||||||||||| |||||| ||||||||  |||||||||| |  | ||||||||| ||||||||||||||| ||||||||||||||||||    
T  31502035 attagaaaaacttttactcttggactctgttgatgatgttcaagctgtaggaatctgtgggatgggtggaatagggaagacaacccttg 31502123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 31528639 - 31528447
Alignment:
Q  25 gcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatg 124  Q
    ||||||||| ||||||| ||||||||||| |||||||| |||  || ||| ||||| |  ||||||||  ||||||| |||| ||||||||   || |      
T  31528639 gcagagattaaaaagattgttgaagagatagtaaatatattgaattgcaaattttcaagccttccaaatgatttagttgggacgcattctctcatagaaa 31528540  T
Q  125 aattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 217  Q
     ||| ||||| | ||||||||||||   | ||||||||||  |  |||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  31528539 gattggaaaagcttttacttttggatgtggttgatgatgttaggattgttggaatttctgggatgggtggagtagggaagacaactcttgcta 31528447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 31034207 - 31034102
Alignment:
Q  30 gattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaatta 129  Q
    |||||||||||| |||||||||||  ||||||  |||||||||  |||||| | |||||||||| ||||||| |||||  |||||| | || | ||||||    
T  31034207 gattgaaaagattgttgaagagataataaatagattgggttaccggttttcaagtcttccaaaagatttagttgggattgattctcttatagaagaatta 31034108  T
Q  130 gaaaaa 135  Q
    ||||||    
T  31034107 gaaaaa 31034102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 31482645 - 31482854
Alignment:
Q  7 acttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcggga 106  Q
    |||| ||||||| || ||| |||||||||||  || ||| ||||||| ||  | | ||| |||||||| |||||  ||||||||||  ||||||| || |    
T  31482645 actttcaggccagaaaatgaagagattgaaactattgttaaagagatagtggagacgtttggttacaaattttcatatcttccaaatgatttagttggaa 31482744  T
Q  107 tgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagac 206  Q
    ||| | ||||| || | ||||| |||||    ||||||||||||||  ||||| | ||||  |  || ||||||||||||||| ||||||| ||||||||    
T  31482745 tgcttcctcctatagaagaattggaaaagtgcttacttttggactccgttgataaggtcctggccgttggaatttgtgggatgagtggagttgggaagac 31482844  T
Q  207 aacccttgct 216  Q
    ||| ||||||    
T  31482845 aactcttgct 31482854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 31245022 - 31245117
Alignment:
Q  124 gaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgctact 219  Q
    ||||||||||| | |||  || |||||||   ||||||||| || || ||||| |||||||| ||||||||| |||||||||| || |||||||||    
T  31245022 gaattagaaaagcttttgattatggactcagatgatgatgttcgagtggtagggatttgtggaatgggtggaatagggaagactactcttgctact 31245117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 17438730 - 17438857
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||| | || | | |||| |||| |||||||||||||||||| |||||| ||| |||| | |||||||||| |||||    
T  17438730 caaaagatttagttgggataaattctcgtatagaagcattaaaaaatcatttacttttggactcggttgatggtgttcgtgctataggaatttgggggat 17438829  T
Q  189 gggtggagtagggaagacaacccttgct 216  Q
    ||| ||| ||||||||||||||||||||    
T  17438830 gggaggaatagggaagacaacccttgct 17438857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 33642504 - 33642633
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| ||||| |||||||||||  |||||| ||| |||| | ||||||||||||| ||    
T  33642504 caaaagatttagttgggattgattctcctataaaagcattacaaaatcatttgcttttggactcagttgatggtgttcgtgctataggaatttgtggaat 33642603  T
Q  189 gggtggagtagggaagacaacccttgctac 218  Q
    ||| ||| ||||||||||||||||||||||    
T  33642604 gggaggaatagggaagacaacccttgctac 33642633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 89 - 217
Target Start/End: Original strand, 31560711 - 31560839
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| ||||| ||||||||||||  ||||| ||| |||||| ||||||||||||| ||    
T  31560711 caaaagatttagttgggattaattctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgttcgtgttataggaatttgtggaat 31560810  T
Q  189 gggtggagtagggaagacaacccttgcta 217  Q
    ||| ||| ||||||||||| |||||||||    
T  31560811 gggaggaatagggaagacagcccttgcta 31560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 33059741 - 33059612
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||||| |||| | |||| |||| ||||| |||||| ||||  |||||| ||| |||| | ||||||||||||| ||    
T  33059741 caaaagatttagttgggattgattctcctatacaagcattacaaaatcatttgcttttgaactcagttgatggtgttcgtgctataggaatttgtggaat 33059642  T
Q  189 gggtggagtagggaagacaacccttgctac 218  Q
    ||| ||| ||||||| ||||||||||||||    
T  33059641 gggaggaatagggaaaacaacccttgctac 33059612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 33273970 - 33273842
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||| | || | | |||| |||| |||||||||||||||||| ||||   ||| |||| | ||||||||||||| ||    
T  33273970 caaaagatttagttgggatagattctcgtttagacggattacaaaatcatttacttttggactcggttgacagtgttcgtgctataggaatttgtggaat 33273871  T
Q  189 gggtggagtagggaagacaacccttgcta 217  Q
    ||| ||| |||||||||||||||||||||    
T  33273870 gggaggaatagggaagacaacccttgcta 33273842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 31567030 - 31567157
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||||| || | |  ||| |||| ||||| |||||||||||| |||||| ||| |||| | ||||||||||||| ||    
T  31567030 caaaagatttagttgggattgattctcctatagaagcgttacaaaatcatttgcttttggactcgattgatggtgttcgtgctataggaatttgtggaat 31567129  T
Q  189 gggtggagtagggaagacaacccttgct 216  Q
    ||| ||| ||||||||||| ||||||||    
T  31567130 ggggggaatagggaagacagcccttgct 31567157  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 9168952 - 9168826
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| ||||| |||||||||||  |||||| ||| |||| | ||||||||||||| ||    
T  9168952 caaaagatttagttgggattaattctcctatagaagcattacaaaatcatttgcttttggactcaattgatggtgttcgtgctataggaatttgtggaat 9168853  T
Q  189 gggtggagtagggaagacaacccttgc 215  Q
    ||| ||| ||||||||||||| |||||    
T  9168852 gggaggaatagggaagacaactcttgc 9168826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 33306664 - 33306536
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| ||||| |||||||||||| |||||  |||  ||| | ||||||||| ||| ||    
T  33306664 caaaagatttagttgggattgattctcctatagaagcattaaaaaatcatttgcttttggactcggttgattgtgtttgtgctataggaatttctggaat 33306565  T
Q  189 gggtggagtagggaagacaacccttgcta 217  Q
    ||| ||| |||||||||||||||||||||    
T  33306564 gggaggaatagggaagacaacccttgcta 33306536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 33390244 - 33390124
Alignment:
Q  95 atttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtgg 194  Q
    ||||||| |||||  |||||||| || | | |||| |||| ||||| |||||||||||  |||||| ||| | || | ||||||||||||| ||||| ||    
T  33390244 atttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggagg 33390145  T
Q  195 agtagggaagacaacccttgc 215  Q
    | |||||||||||||||||||    
T  33390144 aatagggaagacaacccttgc 33390124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 33402792 - 33402664
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| |||||  ||||||||| | |||||| ||| |||| | || |||||||||| ||    
T  33402792 caaaagatttagttgggattgattctcctatagaagcattaaaaaatcatttggttttggacttggttgatggtgttcgtgctataagaatttgtggaat 33402693  T
Q  189 gggtggagtagggaagacaacccttgcta 217  Q
    ||| ||| |||||||||||||||||||||    
T  33402692 gggaggaatagggaagacaacccttgcta 33402664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 33264790 - 33264699
Alignment:
Q  126 attagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 217  Q
    |||| |||| ||||| |||||||||  | |||||| ||| |||| | |||||||||| |||||||| ||| |||||||||||||||||||||    
T  33264790 attacaaaatcatttccttttggacatggttgatggtgttcgtgctataggaatttgggggatgggaggaatagggaagacaacccttgcta 33264699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 33412094 - 33412003
Alignment:
Q  126 attagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 217  Q
    |||| |||| |||||||||||||||||| |||||| |||  ||| | | ||||||||||| ||||| ||| |||| ||||||||||||||||    
T  33412094 attacaaaatcatttacttttggactcggttgatggtgtttgtgctattggaatttgtggaatgggcggaataggaaagacaacccttgcta 33412003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 33360257 - 33360128
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| | |||  |||||||| |||| | |||| |||| ||||| |||||| ||||| |||||| ||| |||| | ||||||||||||| ||    
T  33360257 caaaagatttagttgagattgattctcctatacaagcattacaaaatcatttgcttttgaactcggttgatggtgttcgtgctataggaatttgtggaat 33360158  T
Q  189 gggtggagtagggaagacaacccttgctac 218  Q
     || ||| | ||||| ||||||||||||||    
T  33360157 tggaggaattgggaaaacaacccttgctac 33360128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 127 - 49
Alignment:
Q  139 ttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 217  Q
    ||||||||| | ||| |||||| ||| |||||| |||||||||| |||||||| ||| |||||||||||||||||||||    
T  127 ttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggaggaatagggaagacaacccttgcta 49  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 8888 - 8810
Alignment:
Q  139 ttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 217  Q
    ||||||||| | ||| |||||| ||| |||||| |||||||||| |||||||| ||| |||||||||||||||||||||    
T  8888 ttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggaggaatagggaagacaacccttgcta 8810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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