View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9658_low_18 (Length: 290)
Name: NF9658_low_18
Description: NF9658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9658_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 244592 - 244876
Alignment:
| Q |
1 |
ttttatttttctttgttttctctgttgcttactttggttgataagtactatttcatttcttttaactttaacagcctttgtccgtggagttgggacctgg |
100 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244592 |
ttttatttttctttgttttctcttttgcgtactttggttgataagtactatttcatttcttttaactttaacagcctttgtccgtggagttgggacctgg |
244691 |
T |
|
| Q |
101 |
aatattgggaaatatttttgatggaattcaggtttttcttttaactatgaatatttggttataaatatctgatttcaattgccggcttttcaaaatttga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244692 |
aatattgggaaatatttttgatggaattcaggtttttcttttaactatcaatatttggttataaatatctgatttcaattgccggcttttcaaaatttga |
244791 |
T |
|
| Q |
201 |
atattttctatcttaacagaggccattgaaaactattgcaaaaatatctgctgacgtctatattcctcgtggtgtctctgctcct |
285 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
244792 |
atcttttctatcttaacagaggccattgaaaactattgcaaaaatatctgctgacgtctatattcctcgtggtgtgtctgttcct |
244876 |
T |
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