View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9658_low_20 (Length: 264)
Name: NF9658_low_20
Description: NF9658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9658_low_20 |
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| [»] scaffold1432 (1 HSPs) |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: scaffold1432 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold1432
Description:
Target: scaffold1432; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 1430 - 1645
Alignment:
| Q |
1 |
agattgagaaaggatagggttcggttatttttattgttagaaattttacttgtaaggccaagaggatgctgaatttagctaaagccgctataatccaatt |
100 |
Q |
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| T |
1430 |
agattgagagaggatagggttcggttatttttattgtttgaaattttacttgtaaggccaagaggatgctgaatttagctaaagccgctataatccaatt |
1529 |
T |
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| Q |
101 |
actcaaaatactgtactactaaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatcat |
200 |
Q |
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| T |
1530 |
actcaaaatactgtactactaaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatcat |
1629 |
T |
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| Q |
201 |
aaaatcaccaacaatg |
216 |
Q |
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||| ||||||| |||| |
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| T |
1630 |
aaattcaccaaaaatg |
1645 |
T |
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Target: scaffold0236 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 21943 - 21711
Alignment:
| Q |
1 |
agattgagaaaggatagggttcggttatttttattgttagaaattttacttgtaaggccaagaggatgctgaatttagctaaagccgctataatccaatt |
100 |
Q |
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|||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21943 |
agattgagaaagactagggttcagttatttttattgtttgaaattttacttgtaaggccaagaggatggtgaatttagctaaagccgctataatccaatt |
21844 |
T |
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| Q |
101 |
actcaaaatactgtactactaaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatcat |
200 |
Q |
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| T |
21843 |
actcaaaatact-----agtaaaccaaatcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatcat |
21749 |
T |
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| Q |
201 |
aaaatcaccaacaatgacattagatctggaatcggata |
238 |
Q |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
21748 |
aaaatcaccaacaatgacattagatcttgaatcggata |
21711 |
T |
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