View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9658_low_21 (Length: 259)
Name: NF9658_low_21
Description: NF9658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9658_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 40146915 - 40147137
Alignment:
| Q |
19 |
acgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagtcacaaaagaatgactctgatgataacgaaaaattcaattcatca |
118 |
Q |
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| T |
40146915 |
acgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagccacaaaagaatgactctgatgataacgaaaagttcaatccatca |
40147014 |
T |
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| Q |
119 |
gagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcacttt |
218 |
Q |
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| T |
40147015 |
gagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcacttt |
40147114 |
T |
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| Q |
219 |
ttacacatctttggcgctctgtg |
241 |
Q |
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| T |
40147115 |
ttacacatctttggcgctctgtg |
40147137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 8102953 - 8102812
Alignment:
| Q |
96 |
ataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaa |
195 |
Q |
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| T |
8102953 |
ataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacgggtacgaacaa |
8102854 |
T |
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| Q |
196 |
aatatcatccctccaatcactttttacacatctttggcgctc |
237 |
Q |
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| T |
8102853 |
aatatcttcccttcaagcactttttgcacacctttggtgctc |
8102812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 7655667 - 7655742
Alignment:
| Q |
20 |
cgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagtcacaaaagaatgactctgatg |
95 |
Q |
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| T |
7655667 |
cgttggtttccaaatggaattcaacgacctatacgatttcctttaactatagagccacaaaagaatcactctgatg |
7655742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 7606825 - 7606777
Alignment:
| Q |
20 |
cgttggtttccaagtggtattcaacatcccatacgatttccttttacta |
68 |
Q |
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| T |
7606825 |
cgttggtttccaaatggtattcaacttcccatacgatttcctttcacta |
7606777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 7629211 - 7629167
Alignment:
| Q |
19 |
acgttggtttccaagtggtattcaacatcccatacgatttccttt |
63 |
Q |
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| T |
7629211 |
acgttggtttccaaatggtattcaacttcccatacgatttccttt |
7629167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 7615821 - 7615778
Alignment:
| Q |
20 |
cgttggtttccaagtggtattcaacatcccatacgatttccttt |
63 |
Q |
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| T |
7615821 |
cgttggtttccaaatggtgttcaacagcccatacgatttccttt |
7615778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 39082834 - 39082796
Alignment:
| Q |
126 |
tattccatttcacaaaggagaaaatcgctcaactgaaat |
164 |
Q |
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| T |
39082834 |
tattccatttcacaaaggagaaaatcgcggaactgaaat |
39082796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 7629084 - 7629008
Alignment:
| Q |
125 |
ttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatc |
201 |
Q |
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| T |
7629084 |
ttattccactttacaaaggagaaaatcgtgcaactgaaatcaaaaatcaacaaagagattggtaacatcaaaatatc |
7629008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 11969428 - 11969370
Alignment:
| Q |
92 |
gatgataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaat |
150 |
Q |
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| T |
11969428 |
gatgaaaaagaaaaactcaatccaccagagaggttattccatttcacaaagcagaaaat |
11969370 |
T |
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