View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9658_low_22 (Length: 224)
Name: NF9658_low_22
Description: NF9658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9658_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 2149960 - 2149765
Alignment:
| Q |
13 |
gcagagagtggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatacctcaatgta |
112 |
Q |
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| T |
2149960 |
gcagagaatggacaattgccaaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatacctcaatgta |
2149861 |
T |
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| Q |
113 |
atcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgagtgatgcatgtgctttg |
208 |
Q |
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| T |
2149860 |
atcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgagtgatgcatgtgctttg |
2149765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 2140952 - 2140756
Alignment:
| Q |
12 |
agcagagagtggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatacctcaatgt |
111 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2140952 |
agcagagagtggacaattgcctaagtccattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatacctcaatgt |
2140853 |
T |
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| Q |
112 |
aatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgagtgatgcatgtgctttg |
208 |
Q |
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| T |
2140852 |
aatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtaaaaatttgcctgagtgatgcacgtgctttg |
2140756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 2145483 - 2145290
Alignment:
| Q |
15 |
agagagtggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatacctcaatgtaat |
114 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
2145483 |
agagagtggacaattgcctaagtccattgacaatgtttgttccatatgtcttggtgagtacaaacccatggagacattaaggagtatacctcaatgtaat |
2145384 |
T |
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| Q |
115 |
catcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgagtgatgcatgtgctttg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2145383 |
catcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgagtgatgcatgtgctttg |
2145290 |
T |
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