View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9658_low_24 (Length: 223)

Name: NF9658_low_24
Description: NF9658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9658_low_24
NF9658_low_24
[»] chr4 (13 HSPs)
chr4 (1-223)||(31150380-31150602)
chr4 (29-205)||(31161692-31161868)
chr4 (95-214)||(31476882-31477001)
chr4 (3-219)||(31159285-31159501)
chr4 (13-219)||(31019836-31020042)
chr4 (6-219)||(31489497-31489710)
chr4 (13-209)||(31029727-31029923)
chr4 (125-219)||(31496865-31496959)
chr4 (126-214)||(31502035-31502123)
chr4 (25-217)||(31528447-31528639)
chr4 (30-135)||(31034102-31034207)
chr4 (7-216)||(31482645-31482854)
chr4 (124-219)||(31245022-31245117)
[»] chr2 (1 HSPs)
chr2 (89-216)||(17438730-17438857)
[»] chr6 (12 HSPs)
chr6 (89-218)||(33642504-33642633)
chr6 (89-217)||(31560711-31560839)
chr6 (89-218)||(33059612-33059741)
chr6 (89-217)||(33273842-33273970)
chr6 (89-216)||(31567030-31567157)
chr6 (89-215)||(9168826-9168952)
chr6 (89-217)||(33306536-33306664)
chr6 (95-215)||(33390124-33390244)
chr6 (89-217)||(33402664-33402792)
chr6 (126-217)||(33264699-33264790)
chr6 (126-217)||(33412003-33412094)
chr6 (89-218)||(33360128-33360257)
[»] scaffold1749 (1 HSPs)
scaffold1749 (139-217)||(49-127)
[»] scaffold0428 (1 HSPs)
scaffold0428 (139-217)||(8810-8888)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31150602 - 31150380
Alignment:
Q  1 aataaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150602 aataaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttag 31150503  T
Q  101 tcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150502 tcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagg 31150403  T
Q  201 gaagacaacccttgctactattc 223  Q
    |||||||||||||||||||||||    
T  31150402 gaagacaacccttgctactattc 31150380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 31161868 - 31161692
Alignment:
Q  29 agattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaatt 128  Q
    |||||||||||||||| ||||| ||| | |||||  |||||||||||| | | | |||||||||  ||||||  |||||| |||||| |  | | |||||    
T  31161868 agattgaaaagatcgtcgaagaaattatgaatatactgggttacaagtctacaagtcttccaaattatttagctgggatggattctcttacagaagaatt 31161769  T
Q  129 agaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaaga 205  Q
    ||||||||||||||||||||| ||| |||||||||| || ||||||||| ||||||||||||||||| |||||||||    
T  31161768 agaaaaacatttacttttggattcggttgatgatgtgcgggttgtaggagtttgtgggatgggtggaatagggaaga 31161692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 31476882 - 31477001
Alignment:
Q  95 atttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtgg 194  Q
    ||||||| |||||| ||||||||  ||| ||||||||||| | |||||||||||||||  |||||||||| | |||||||||||||||||||||||||||    
T  31476882 atttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgatgttcatgttgtaggaatttgtgggatgggtgg 31476981  T
Q  195 agtagggaagacaacccttg 214  Q
    | ||||||||||||||||||    
T  31476982 aatagggaagacaacccttg 31477001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 31159501 - 31159285
Alignment:
Q  3 taaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtc 102  Q
    |||||||| |||||| ||| ||||||||||||||||||| |||||||||||    ||||| | |||| |||| |||||   |||||||||| | |||||     
T  31159501 taaaactttcaggcctcaatatgcagagattgaaaagattgttgaagagataacgaatatatcgggtcacaaattttcatgtcttccaaaagaattagtt 31159402  T
Q  103 gggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtaggga 202  Q
    || ||  ||| |||| || |  || ||| ||| |  ||||||||||||||  |||||||||| || ||||||||||||||||||||||||||| ||||||    
T  31159401 ggaataaattatcctatagaaaaagtagcaaatctattacttttggactccgttgatgatgttcgggttgtaggaatttgtgggatgggtggaataggga 31159302  T
Q  203 agacaacccttgctact 219  Q
    ||||||| ||| |||||    
T  31159301 agacaactcttactact 31159285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 31020042 - 31019836
Alignment:
Q  13 aggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcatt 112  Q
    ||||| ||| |||| |||||| ||||||| |||||||||||  | ||||| |||||| |||| |||||   |||||||||| |  |||| || ||| ||     
T  31020042 aggcctcaatatgctgagattaaaaagattgttgaagagatattgaatatattgggtcacaacttttcatctcttccaaaagaactagttggtatgaatc 31019943  T
Q  113 ctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaaccct 212  Q
    ||| | || |  || ||| ||| |  ||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||||||||||| ||    
T  31019942 ctcatatagaaaaagtagtaaatctattacttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactct 31019843  T
Q  213 tgctact 219  Q
     ||||||    
T  31019842 ggctact 31019836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 219
Target Start/End: Original strand, 31489497 - 31489710
Alignment:
Q  6 aacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcggg 105  Q
    ||||| |||||| ||| ||| ||||||| ||||||| ||||| |||||  | ||||| |||||| |||| | |||   |||||||||| |  |||| ||     
T  31489497 aactttcaggcctcaatatgaagagattaaaaagattgttgacgagatattgaatatattgggtcacaattattcatctcttccaaaagaactagttggt 31489596  T
Q  106 atgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaaga 205  Q
    ||| |||||| | || || || ||| ||| |  ||||||||||||||  |||||||||| || ||||||||||||||||||||||||||| |||||||||    
T  31489597 atgaattctcatatagataaagtagcaaatctattacttttggactccattgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaaga 31489696  T
Q  206 caacccttgctact 219  Q
    |||| || ||||||    
T  31489697 caactctggctact 31489710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 31029923 - 31029727
Alignment:
Q  13 aggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcatt 112  Q
    ||||| ||| |||| |||||| ||||||| |||||||||||  | ||||| |||||| |||| |||||   |||||||||| |  |||| || ||| ||     
T  31029923 aggcctcaatatgctgagattaaaaagattgttgaagagatattgaatatattgggtcacaacttttcatctcttccaaaagaactagttggtatgaatc 31029824  T
Q  113 ctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaac 209  Q
    ||| | || |  || ||| ||| |  ||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||||||||||    
T  31029823 ctcatatagaaaaagtagtaaatctattacttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaac 31029727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 31496865 - 31496959
Alignment:
Q  125 aattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgctact 219  Q
    |||||||||| | |||||||||||||||| || ||||||  |||||  ||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  31496865 aattagaaaagcttttacttttggactcggttaatgatggtcgtgtcataggaatttgtgggatgggaggaatagggaagactacccttgctact 31496959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 31502035 - 31502123
Alignment:
Q  126 attagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttg 214  Q
    ||||||||||| |||||| ||||||||  |||||||||| |  | ||||||||| ||||||||||||||| ||||||||||||||||||    
T  31502035 attagaaaaacttttactcttggactctgttgatgatgttcaagctgtaggaatctgtgggatgggtggaatagggaagacaacccttg 31502123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 31528639 - 31528447
Alignment:
Q  25 gcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatg 124  Q
    ||||||||| ||||||| ||||||||||| |||||||| |||  || ||| ||||| |  ||||||||  ||||||| |||| ||||||||   || |      
T  31528639 gcagagattaaaaagattgttgaagagatagtaaatatattgaattgcaaattttcaagccttccaaatgatttagttgggacgcattctctcatagaaa 31528540  T
Q  125 aattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 217  Q
     ||| ||||| | ||||||||||||   | ||||||||||  |  |||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  31528539 gattggaaaagcttttacttttggatgtggttgatgatgttaggattgttggaatttctgggatgggtggagtagggaagacaactcttgcta 31528447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 31034207 - 31034102
Alignment:
Q  30 gattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaatta 129  Q
    |||||||||||| |||||||||||  ||||||  |||||||||  |||||| | |||||||||| ||||||| |||||  |||||| | || | ||||||    
T  31034207 gattgaaaagattgttgaagagataataaatagattgggttaccggttttcaagtcttccaaaagatttagttgggattgattctcttatagaagaatta 31034108  T
Q  130 gaaaaa 135  Q
    ||||||    
T  31034107 gaaaaa 31034102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 31482645 - 31482854
Alignment:
Q  7 acttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcggga 106  Q
    |||| ||||||| || ||| |||||||||||  || ||| ||||||| ||  | | ||| |||||||| |||||  ||||||||||  ||||||| || |    
T  31482645 actttcaggccagaaaatgaagagattgaaactattgttaaagagatagtggagacgtttggttacaaattttcatatcttccaaatgatttagttggaa 31482744  T
Q  107 tgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagac 206  Q
    ||| | ||||| || | ||||| |||||    ||||||||||||||  ||||| | ||||  |  || ||||||||||||||| ||||||| ||||||||    
T  31482745 tgcttcctcctatagaagaattggaaaagtgcttacttttggactccgttgataaggtcctggccgttggaatttgtgggatgagtggagttgggaagac 31482844  T
Q  207 aacccttgct 216  Q
    ||| ||||||    
T  31482845 aactcttgct 31482854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 31245022 - 31245117
Alignment:
Q  124 gaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgctact 219  Q
    ||||||||||| | |||  || |||||||   ||||||||| || || ||||| |||||||| ||||||||| |||||||||| || |||||||||    
T  31245022 gaattagaaaagcttttgattatggactcagatgatgatgttcgagtggtagggatttgtggaatgggtggaatagggaagactactcttgctact 31245117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 17438730 - 17438857
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||| | || | | |||| |||| |||||||||||||||||| |||||| ||| |||| | |||||||||| |||||    
T  17438730 caaaagatttagttgggataaattctcgtatagaagcattaaaaaatcatttacttttggactcggttgatggtgttcgtgctataggaatttgggggat 17438829  T
Q  189 gggtggagtagggaagacaacccttgct 216  Q
    ||| ||| ||||||||||||||||||||    
T  17438830 gggaggaatagggaagacaacccttgct 17438857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 33642504 - 33642633
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| ||||| |||||||||||  |||||| ||| |||| | ||||||||||||| ||    
T  33642504 caaaagatttagttgggattgattctcctataaaagcattacaaaatcatttgcttttggactcagttgatggtgttcgtgctataggaatttgtggaat 33642603  T
Q  189 gggtggagtagggaagacaacccttgctac 218  Q
    ||| ||| ||||||||||||||||||||||    
T  33642604 gggaggaatagggaagacaacccttgctac 33642633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 89 - 217
Target Start/End: Original strand, 31560711 - 31560839
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| ||||| ||||||||||||  ||||| ||| |||||| ||||||||||||| ||    
T  31560711 caaaagatttagttgggattaattctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgttcgtgttataggaatttgtggaat 31560810  T
Q  189 gggtggagtagggaagacaacccttgcta 217  Q
    ||| ||| ||||||||||| |||||||||    
T  31560811 gggaggaatagggaagacagcccttgcta 31560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 33059741 - 33059612
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||||| |||| | |||| |||| ||||| |||||| ||||  |||||| ||| |||| | ||||||||||||| ||    
T  33059741 caaaagatttagttgggattgattctcctatacaagcattacaaaatcatttgcttttgaactcagttgatggtgttcgtgctataggaatttgtggaat 33059642  T
Q  189 gggtggagtagggaagacaacccttgctac 218  Q
    ||| ||| ||||||| ||||||||||||||    
T  33059641 gggaggaatagggaaaacaacccttgctac 33059612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 33273970 - 33273842
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||| | || | | |||| |||| |||||||||||||||||| ||||   ||| |||| | ||||||||||||| ||    
T  33273970 caaaagatttagttgggatagattctcgtttagacggattacaaaatcatttacttttggactcggttgacagtgttcgtgctataggaatttgtggaat 33273871  T
Q  189 gggtggagtagggaagacaacccttgcta 217  Q
    ||| ||| |||||||||||||||||||||    
T  33273870 gggaggaatagggaagacaacccttgcta 33273842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 31567030 - 31567157
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||||| || | |  ||| |||| ||||| |||||||||||| |||||| ||| |||| | ||||||||||||| ||    
T  31567030 caaaagatttagttgggattgattctcctatagaagcgttacaaaatcatttgcttttggactcgattgatggtgttcgtgctataggaatttgtggaat 31567129  T
Q  189 gggtggagtagggaagacaacccttgct 216  Q
    ||| ||| ||||||||||| ||||||||    
T  31567130 ggggggaatagggaagacagcccttgct 31567157  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 9168952 - 9168826
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| ||||| |||||||||||  |||||| ||| |||| | ||||||||||||| ||    
T  9168952 caaaagatttagttgggattaattctcctatagaagcattacaaaatcatttgcttttggactcaattgatggtgttcgtgctataggaatttgtggaat 9168853  T
Q  189 gggtggagtagggaagacaacccttgc 215  Q
    ||| ||| ||||||||||||| |||||    
T  9168852 gggaggaatagggaagacaactcttgc 9168826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 33306664 - 33306536
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| ||||| |||||||||||| |||||  |||  ||| | ||||||||| ||| ||    
T  33306664 caaaagatttagttgggattgattctcctatagaagcattaaaaaatcatttgcttttggactcggttgattgtgtttgtgctataggaatttctggaat 33306565  T
Q  189 gggtggagtagggaagacaacccttgcta 217  Q
    ||| ||| |||||||||||||||||||||    
T  33306564 gggaggaatagggaagacaacccttgcta 33306536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 33390244 - 33390124
Alignment:
Q  95 atttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtgg 194  Q
    ||||||| |||||  |||||||| || | | |||| |||| ||||| |||||||||||  |||||| ||| | || | ||||||||||||| ||||| ||    
T  33390244 atttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggagg 33390145  T
Q  195 agtagggaagacaacccttgc 215  Q
    | |||||||||||||||||||    
T  33390144 aatagggaagacaacccttgc 33390124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 33402792 - 33402664
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| |||||  ||||||||| | |||||| ||| |||| | || |||||||||| ||    
T  33402792 caaaagatttagttgggattgattctcctatagaagcattaaaaaatcatttggttttggacttggttgatggtgttcgtgctataagaatttgtggaat 33402693  T
Q  189 gggtggagtagggaagacaacccttgcta 217  Q
    ||| ||| |||||||||||||||||||||    
T  33402692 gggaggaatagggaagacaacccttgcta 33402664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 33264790 - 33264699
Alignment:
Q  126 attagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 217  Q
    |||| |||| ||||| |||||||||  | |||||| ||| |||| | |||||||||| |||||||| ||| |||||||||||||||||||||    
T  33264790 attacaaaatcatttccttttggacatggttgatggtgttcgtgctataggaatttgggggatgggaggaatagggaagacaacccttgcta 33264699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 33412094 - 33412003
Alignment:
Q  126 attagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 217  Q
    |||| |||| |||||||||||||||||| |||||| |||  ||| | | ||||||||||| ||||| ||| |||| ||||||||||||||||    
T  33412094 attacaaaatcatttacttttggactcggttgatggtgtttgtgctattggaatttgtggaatgggcggaataggaaagacaacccttgcta 33412003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 33360257 - 33360128
Alignment:
Q  89 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 188  Q
    ||||| ||||||| | |||  |||||||| |||| | |||| |||| ||||| |||||| ||||| |||||| ||| |||| | ||||||||||||| ||    
T  33360257 caaaagatttagttgagattgattctcctatacaagcattacaaaatcatttgcttttgaactcggttgatggtgttcgtgctataggaatttgtggaat 33360158  T
Q  189 gggtggagtagggaagacaacccttgctac 218  Q
     || ||| | ||||| ||||||||||||||    
T  33360157 tggaggaattgggaaaacaacccttgctac 33360128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 127 - 49
Alignment:
Q  139 ttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 217  Q
    ||||||||| | ||| |||||| ||| |||||| |||||||||| |||||||| ||| |||||||||||||||||||||    
T  127 ttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggaggaatagggaagacaacccttgcta 49  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 8888 - 8810
Alignment:
Q  139 ttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 217  Q
    ||||||||| | ||| |||||| ||| |||||| |||||||||| |||||||| ||| |||||||||||||||||||||    
T  8888 ttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggaggaatagggaagacaacccttgcta 8810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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