View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9658_low_27 (Length: 202)
Name: NF9658_low_27
Description: NF9658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9658_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 12785794 - 12785956
Alignment:
| Q |
23 |
cgtgtgtctgggcctctaaagctcacaaacacgtcataattaatctcaaccaaatcttttgtacgacttggaaacttgcaacccataatatttatatgtt |
122 |
Q |
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| T |
12785794 |
cgtgtgtctgggcctctaaagctcacaaacacgtcataattaatctcaaccaaatcttttgtacgacttgaaaacttgcaacccagaatatttatatgtt |
12785893 |
T |
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| Q |
123 |
caatgatgttttcaatctccgcatgttgtggcctgcaagtttaaaacaattaaccatcaacac |
185 |
Q |
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| T |
12785894 |
caatgatgttttcaagctccgcatgttgtggcctgcaagtttaaaacaattaaccaacaacac |
12785956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 12781604 - 12781770
Alignment:
| Q |
23 |
cgtgtgtctgggcctctaaagctcacaaacacgtcataattaatctcaaccaaatcttttgtacgacttggaaacttgcaacccataatatttatatgtt |
122 |
Q |
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| T |
12781604 |
cgtgtgtctgggcctctaaagctcacaaacacgtcataattaatctcaaccaaatcttttgtacgacttggaaacttgcaacccaaaatatttatatgtt |
12781703 |
T |
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| Q |
123 |
caatgatgttttcaatctccgcatgttgtggcctgcaagtttaaaacaattaaccatcaacacgaaa |
189 |
Q |
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| T |
12781704 |
caattatgttttcaagctccgcatgatgtggcctgcatatttataacaattaaccatcaacacgaaa |
12781770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 31150555 - 31150598
Alignment:
| Q |
121 |
ttcaatgatgttttcaatctccgcatgttgtggcctgcaagttt |
164 |
Q |
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| T |
31150555 |
ttcaacgatcttttcaatctctgcatgttgtggcctgcaagttt |
31150598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 31160129 - 31160165
Alignment:
| Q |
24 |
gtgtgtctgggcctctaaagctcacaaacacgtcata |
60 |
Q |
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| T |
31160129 |
gtgtgtcttggcctctaaagctcacaaaaacgtcata |
31160165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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