View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9658_low_5 (Length: 462)

Name: NF9658_low_5
Description: NF9658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9658_low_5
NF9658_low_5
[»] chr3 (14 HSPs)
chr3 (13-462)||(6938661-6939113)
chr3 (72-276)||(6549838-6550044)
chr3 (277-440)||(6796833-6797010)
chr3 (232-341)||(6527250-6527364)
chr3 (232-341)||(6848831-6848945)
chr3 (381-462)||(6527396-6527474)
chr3 (381-462)||(6848977-6849055)
chr3 (72-156)||(6796616-6796700)
chr3 (386-462)||(6789223-6789299)
chr3 (381-456)||(6558662-6558740)
chr3 (72-136)||(6763998-6764062)
chr3 (13-55)||(6549741-6549783)
chr3 (344-376)||(6410959-6410991)
chr3 (195-240)||(6796775-6796820)
[»] scaffold0425 (2 HSPs)
scaffold0425 (381-462)||(12082-12160)
scaffold0425 (277-335)||(11982-12044)


Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 462
Target Start/End: Complemental strand, 6939113 - 6938661
Alignment:
Q  13 ttttcttcattagaatgagtagccgatgcatcaataagactggcctgttataatcaatcaatgtaacacagaaccattctacaaggcatcactctaattt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  6939113 ttttcttcattagaatgagtagccgatgcatcaataagactggcctgttataatcaatcaatgtaacacagaaccattctggaaggcatcactctaattt 6939014  T
Q  113 atgcagtaggaatgatgagacagcagactttgatggaaacggacagctgaatgaaggaaaccgagtatcaggaca--gtttgtttcagtcagagaatatc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  6939013 atgcagtaggaatgatgagacagcagactttgatggaaacggacagctgaatgaaggaaaccgagtatcaggacaaagtttgtttcagtcagagaatatc 6938914  T
Q  211 attgtcgagaggtgtgcattttgtgatgtcaggactcaggcagctacttcaacttcttactctttg-atgtccttcgtagttcatacaccggaattcgac 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6938913 attgtcgagaggtgtgcattttgtgatgtcaggactcaggcagctacttcaacttcttactctttgtatgtccttcgtagttcatacaccggaattcgac 6938814  T
Q  310 ttgtcaaattaaattcaataaaacacaactttcaataaaactatcaacaaatcataactaaattctgatttctttttctcagtttatgaataagtttatc 409  Q
    ||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6938813 ttgtcaatttaaattcaataaaacactactgtcaataaaactatcaacaaatcataactaaattctgatttctttttctcagtttgtgaataagtttatc 6938714  T
Q  410 tatctgcataattagaaggttctgctgtgctgatcaaaaagccacaacagttc 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6938713 tatctgcataattagaaggttctgctgtgctgatcaaaaagccacaacagttc 6938661  T

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Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 72 - 276
Target Start/End: Original strand, 6549838 - 6550044
Alignment:
Q  72 aatgtaacacagaaccattctacaaggcatcactctaatttatgcagtaggaatgatgagacagcagactttgatggaaacggacagctgaatgaaggaa 171  Q
    ||||||||||||||||||||| |||||||  |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6549838 aatgtaacacagaaccattctgcaaggcactactccaatttatgcattaggaatgatgagacagcagactttgatggaaacggacagctgaatgaaggaa 6549937  T
Q  172 accgagtatcaggac--agtttgtttcagtcagagaatatcattgtcgagaggtgtgcattttgtgatgtcaggactcaggcagctacttcaacttctta 269  Q
    |||||| | ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||  ||| |    
T  6549938 accgagcagcaggacaaagtttgtttcagtcagagaatatcattgtcgagaggtgtgcattttgtgatgtcaggactcaggcatccacttcaaagtctga 6550037  T
Q  270 ctctttg 276  Q
    |||||||    
T  6550038 ctctttg 6550044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 440
Target Start/End: Original strand, 6796833 - 6797010
Alignment:
Q  277 atgtccttcgtagttcatacaccggaattcgacttgtcaaatta----aattcaataaaacacaactttcaataaaactatcaacaaatcataactaaat 372  Q
    |||| |||| ||||||||||||||||| | ||| |||||  |||    ||||||||||||||| || || ||||||||||| ||||||||||||||||||    
T  6796833 atgttcttcctagttcatacaccggaagttgacgtgtcagtttagtgaaattcaataaaacactacgtttaataaaactatgaacaaatcataactaaat 6796932  T
Q  373 tctg----------atttctttttctcagtttatgaataagtttatctatctgcataattagaaggttctgctgtgct 440  Q
    ||||          |||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||    
T  6796933 tctggttggaaatcatttctttttctcagtttgtgaataagcttatctatctgcataattcgaaggttctgctgtgct 6797010  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 232 - 341
Target Start/End: Original strand, 6527250 - 6527364
Alignment:
Q  232 tgtgatgtcaggactcaggcagctacttcaacttcttactctttg-atgtccttcgtagttcatacaccggaattcgacttgtcaaatt----aaattca 326  Q
    |||||||||| |||||||||| | |||||||| |||||||||||| ||||||||| ||||||||||||||||| | |||||||||| ||    |||||||    
T  6527250 tgtgatgtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattca 6527349  T
Q  327 ataaaacacaacttt 341  Q
    ||||||||| |||||    
T  6527350 ataaaacactacttt 6527364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 232 - 341
Target Start/End: Original strand, 6848831 - 6848945
Alignment:
Q  232 tgtgatgtcaggactcaggcagctacttcaacttcttactctttg-atgtccttcgtagttcatacaccggaattcgacttgtcaaatt----aaattca 326  Q
    |||||||||| |||||||||| | |||||||| |||||||||||| ||||||||| ||||||||||||||||| | |||||||||| ||    |||||||    
T  6848831 tgtgatgtcaagactcaggcatccacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattca 6848930  T
Q  327 ataaaacacaacttt 341  Q
    ||||||||| |||||    
T  6848931 ataaaacactacttt 6848945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 381 - 462
Target Start/End: Original strand, 6527396 - 6527474
Alignment:
Q  381 ctttttctcagtttatgaataagtttatctatctgcataattagaaggttctgctgtgctgatcaaaaagccacaacagttc 462  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||||||| ||||||   ||||||||||||||||||||    
T  6527396 ctttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtgc---tcaaaaagccacaacagttc 6527474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 381 - 462
Target Start/End: Original strand, 6848977 - 6849055
Alignment:
Q  381 ctttttctcagtttatgaataagtttatctatctgcataattagaaggttctgctgtgctgatcaaaaagccacaacagttc 462  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||||||| ||||||   ||||||||||||||||||||    
T  6848977 ctttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtgc---tcaaaaagccacaacagttc 6849055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 6796616 - 6796700
Alignment:
Q  72 aatgtaacacagaaccattctacaaggcatcactctaatttatgcagtaggaatgatgagacagcagactttgatggaaacggac 156  Q
    ||||||||||||||||||||| ||||||   |||| |||||||||| |||||||||||| |||||||||||||| ||||| ||||    
T  6796616 aatgtaacacagaaccattctccaaggcgctactccaatttatgcattaggaatgatgatacagcagactttgacggaaatggac 6796700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 386 - 462
Target Start/End: Original strand, 6789223 - 6789299
Alignment:
Q  386 tctcagtttatgaataagtttatctatctgcataattagaaggttctgctgtgctgatcaaaaagccacaacagttc 462  Q
    ||||||||| ||||||  ||||||||| |  || | |||| ||||||||||||||||||||||||||||||||||||    
T  6789223 tctcagtttgtgaatatttttatctatttatatcactagagggttctgctgtgctgatcaaaaagccacaacagttc 6789299  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 456
Target Start/End: Original strand, 6558662 - 6558740
Alignment:
Q  381 ctttttctcagtttatgaataagtttatctatctgcataattag---aaggttctgctgtgctgatcaaaaagccacaa 456  Q
    |||||||||||||| |||||| ||||||||||||  || | |||   |||||||| |||||||||||||||||||||||    
T  6558662 ctttttctcagtttgtgaataggtttatctatctatatcactagtagaaggttctcctgtgctgatcaaaaagccacaa 6558740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 6764062 - 6763998
Alignment:
Q  72 aatgtaacacagaaccattctacaaggcatcactctaatttatgcagtaggaatgatgagacagc 136  Q
    ||||||| |||||||||||||||||| ||  |||| |||||||||| ||||||||||||| ||||    
T  6764062 aatgtaaaacagaaccattctacaagacactactccaatttatgcattaggaatgatgagtcagc 6763998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 6549741 - 6549783
Alignment:
Q  13 ttttcttcattagaatgagtagccgatgcatcaataagactgg 55  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  6549741 ttttcttcattagaatgtgtagccaatgcatcaataagactgg 6549783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 6410959 - 6410991
Alignment:
Q  344 ataaaactatcaacaaatcataactaaattctg 376  Q
    |||||||||||||||||||||||||||||||||    
T  6410959 ataaaactatcaacaaatcataactaaattctg 6410991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 6796775 - 6796820
Alignment:
Q  195 tcagtcagagaatatcattgtcgagaggtgtgcattttgtgatgtc 240  Q
    |||| ||||||| |||||||| |||||| |||||||||||||||||    
T  6796775 tcagacagagaaaatcattgtggagaggcgtgcattttgtgatgtc 6796820  T

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Target: scaffold0425 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 381 - 462
Target Start/End: Original strand, 12082 - 12160
Alignment:
Q  381 ctttttctcagtttatgaataagtttatctatctgcataattagaaggttctgctgtgctgatcaaaaagccacaacagttc 462  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||||||| ||||||   ||||||||||||||||||||    
T  12082 ctttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtgc---tcaaaaagccacaacagttc 12160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 11982 - 12044
Alignment:
Q  277 atgtccttcgtagttcatacaccggaattcgacttgtcaaatt----aaattcaataaaacac 335  Q
    ||||||||| ||||||||||||||||| | |||||||||| ||    ||||||||||||||||    
T  11982 atgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacac 12044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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