View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9658_low_9 (Length: 429)
Name: NF9658_low_9
Description: NF9658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9658_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 42 - 408
Target Start/End: Complemental strand, 244586 - 244230
Alignment:
| Q |
42 |
tagatatagaatcaaaccttgtgagtacgtaacacaggatcattaaccattaacccagcggtttcctcataaactgaaattgcagagaagcaaattagat |
141 |
Q |
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| T |
244586 |
tagatatagaatcaaaccttgtgagtacgtaacacaggatcattaaccattaacccagcggtttcctcataaactgaaattgcaga-------------t |
244500 |
T |
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| Q |
142 |
ttattttataaattaaaaaacaaacaaagggaacagaaaataatgtattctatctaaattgaaatatactgtagtgatagtatagaa---tctagaagaa |
238 |
Q |
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| T |
244499 |
ttattttataaattaaaaaacaaacaaagggaacagaaaataatgtattctatctaaattgaaatatactgtagtgatagtatagaagaatctagaagaa |
244400 |
T |
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| Q |
239 |
gaggtaccttggatagtggcagaatccccttccaaacgaataatttcaccgatgagattatcattaccaacacggacgagttcatacatagcagcaccat |
338 |
Q |
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| T |
244399 |
gaggtaccttggatagtggcagaatccccttccaaacgaataatttcaccgatgagattatcattaccaacacggacgagttcatacatagcagcaccat |
244300 |
T |
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| Q |
339 |
tcatgccatcagcaatgacgacaggtccagaaacctgttatgagattcaaattatggatgaaatcaataa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244299 |
tcatgccatcagcaatgacgacaggtccagaaacctgttatgagattcaaattatggatgaaatcaataa |
244230 |
T |
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