View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9659_high_2 (Length: 658)
Name: NF9659_high_2
Description: NF9659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9659_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 590; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 643
Target Start/End: Complemental strand, 40952115 - 40951473
Alignment:
| Q |
1 |
caaaagtccaatttcagatatgatcaaaagagttgtcaaagatatgagagctcctgtgacggtgctgcacgtgacaccgatggatgcatataggagtgat |
100 |
Q |
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| T |
40952115 |
caaaagtccaatttcagatatgatcaaaagagttgtgaaagatatgagtgctcctgtgacggtgctgcacgtgacaccgatggatgcatataggagtgat |
40952016 |
T |
|
| Q |
101 |
ggcaatgtggaaacttggagtgacaaaccatctgtacctgattgcagtcattggtgtttacctggtgttcctgatatgtggaatgaaattctcttctcat |
200 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40952015 |
ggccatgtgggaacttggagtgacaaaccatctgtacctgattgcagtcattggtgtttacctggtgttcctgatatgtggaatgaaattctcttctcat |
40951916 |
T |
|
| Q |
201 |
acttgctacgaaaagatgaagcaagttaacattaaagccattagtaacatgtgatgtgttagttagtggttgtattattgattttccatatgtattaaac |
300 |
Q |
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| T |
40951915 |
acttgctacaaaaagatgaagcaagttaacattaaagccagtagtaacatgtgatgtgttagttagtggttgtattattgattttccatatgtattaaac |
40951816 |
T |
|
| Q |
301 |
aagcaaaagtcattactagtataacatgagtaattaggttatacacccctgtagagaatgtgacttgttgtaacnnnnnnngagagcatgtgacttactc |
400 |
Q |
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| T |
40951815 |
aagcaaaagtcattactagtataacatgagtaattaggttatacacccctgtagagaatgtgacatgttgtaacaaaaaaagagagcatgtgacttactc |
40951716 |
T |
|
| Q |
401 |
cctcgtctttagctagtaataataaattaagttagtattttaagaagaacttgtaagtagattaaaatactatttctatctatgattattccagctcaaa |
500 |
Q |
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| T |
40951715 |
cctcgtctttagctagtaataataaattaagttagtactttaagaagaacttgtaagtagattaaaatactatttctatctatgattattccagctcaaa |
40951616 |
T |
|
| Q |
501 |
gtttatccaaatgtgttgtaatgaagagtttaccataaaagggaggtgttatccctattgtaaataattgttcaacaatcattatcattaacaagacttc |
600 |
Q |
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| T |
40951615 |
gtttatccaaatgtgttgtaatgaagagtttaccataaaagggaggtgttatccctattgtaaataattgttcaacaatcattatcattaacaagacttc |
40951516 |
T |
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| Q |
601 |
tcaccaattataagtgattgctgctttgactttccagtgaact |
643 |
Q |
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| T |
40951515 |
tcaccaattataagtgattgctgctttgactttccagtgaact |
40951473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 568 - 643
Target Start/End: Complemental strand, 40942062 - 40941987
Alignment:
| Q |
568 |
ttgttcaacaatcattatcattaacaagacttctcacca-attataagtgattgctgctttgactttccagtgaact |
643 |
Q |
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| T |
40942062 |
ttgttcaacaatcatgatcataaacaagacttctcaccatataataagtgattgctgctttga-ttttcagtgaact |
40941987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 288 - 502
Target Start/End: Complemental strand, 40942340 - 40942114
Alignment:
| Q |
288 |
atatgtattaaacaagcaaaagtcattactagta----taacatgagtaattaggttatacacccctgtagagaatgtgacttgttgtaacnnnnnnnga |
383 |
Q |
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| T |
40942340 |
atatgtattaaacaagtaaaaattattgctagtacgtataatatgagtaattagtttataaactcctcaaaagaatgtgacttgttgtaacaaagagaga |
40942241 |
T |
|
| Q |
384 |
gagcatgtgacttactccctcgtct----------ttagctagtaataataaattaagttagtattttaagaagaacttgtaagtagatt-aaaatacta |
472 |
Q |
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|||| |||||||||||||| | ||| || |||||||||||||||||||| ||||| ||| ||||||||||||||||||| | | ||||| |
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| T |
40942240 |
gagcgtgtgacttactcccacatcttaagtaaatatttgctagtaataataaattaagatagtacttt---aagaacttgtaagtagattgatactacta |
40942144 |
T |
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| Q |
473 |
tttctatctatgattattccagctcaaagt |
502 |
Q |
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| T |
40942143 |
attccatctaagattatttaagctcaaagt |
40942114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 39085604 - 39085654
Alignment:
| Q |
140 |
gattgcagtcattggtgtttacctggtgttcctgatatgtggaatgaaatt |
190 |
Q |
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| T |
39085604 |
gattgcagccattggtgtctacctggagtgcctgatatgtggaatgaaatt |
39085654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 19411882 - 19411834
Alignment:
| Q |
138 |
ctgattgcagtcattggtgtttacctggtgttcctgatatgtggaatga |
186 |
Q |
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| T |
19411882 |
ctgattgcagtcattggtgcctccctggtgtgcctgatatttggaatga |
19411834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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