View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9659_high_3 (Length: 550)
Name: NF9659_high_3
Description: NF9659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9659_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 198 - 535
Target Start/End: Complemental strand, 41705399 - 41705065
Alignment:
| Q |
198 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctattatggagagtgagtgtgttagaggt |
297 |
Q |
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| T |
41705399 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctatcatggagagtgagtgtgttagaggt |
41705300 |
T |
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| Q |
298 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgatgaggagaaataacaggggagaagccatttggttaaaca--gtatttgnnnnnn |
395 |
Q |
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| T |
41705299 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgaggaggagaaataacaggggagaagccatttggttaaacagggtatttg-ttttt |
41705201 |
T |
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| Q |
396 |
nngtgttggaacttgaatacagagagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgatgtgagtgagagaatgagagtgttttgttt |
495 |
Q |
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| T |
41705200 |
ttgtgttggaacttgaatac--agagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgatatgagt--gagaatgagagtgttttgttt |
41705105 |
T |
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| Q |
496 |
gttgtttataaaggggaaaaagaagagtgaggcacaggtt |
535 |
Q |
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| T |
41705104 |
gttgtttataaaggggaaaaagaagagtgaggcacaggtt |
41705065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 41705577 - 41705459
Alignment:
| Q |
20 |
taagcttgggttttaattcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttggga |
119 |
Q |
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| T |
41705577 |
taagcttgggttttaattcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttggga |
41705478 |
T |
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| Q |
120 |
gtggggtccgaggttgaag |
138 |
Q |
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| T |
41705477 |
gtggggtccgaggttgaag |
41705459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 3744338 - 3744418
Alignment:
| Q |
36 |
ttcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttg |
116 |
Q |
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| T |
3744338 |
ttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttg |
3744418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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