View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9659_high_6 (Length: 248)
Name: NF9659_high_6
Description: NF9659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9659_high_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 17591601 - 17591826
Alignment:
| Q |
16 |
ggacatctgatctgcagtctcaaattcctctacaaacaaatggtaacagcttctaacagagaagcctttggatcaatactaatttctctcttgcaggctt |
115 |
Q |
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| T |
17591601 |
ggacatctgatctgcagtctcaaattcctctacaaacaaatggtaacagcttctaacagagaagcctttggatcaatact---ttctctcttgcaggctt |
17591697 |
T |
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| Q |
116 |
tataatttcactaattttgacttcgatgtaccttattccatactctttgcattataatttatttgtaccaattgaaatcctggttgcaatttatataata |
215 |
Q |
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| T |
17591698 |
tataatttcactatttttgactt----gtaccttattccatactctttgtattataatttatttgtaccaattgaaatcctggttgcaatttatataata |
17591793 |
T |
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| Q |
216 |
gatttagtcacatgataatttctctttgacatt |
248 |
Q |
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| T |
17591794 |
gatttagtcacatgataatttctgtttgacatt |
17591826 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 33023861 - 33023785
Alignment:
| Q |
162 |
ttgcattataatttatttgtaccaattgaaatcctggttgcaatttatataatagatttagtcacatgataatttctc |
239 |
Q |
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|||||||||||| ||| |||| ||| |||||| |||||||||||||||||| | ||||||| |||||||||| ||||| |
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| T |
33023861 |
ttgcattataatatatatgtagcaactgaaattctggttgcaatttatatagtggatttag-cacatgataacttctc |
33023785 |
T |
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