View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9659_low_12 (Length: 252)
Name: NF9659_low_12
Description: NF9659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9659_low_12 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 26721382 - 26721141
Alignment:
| Q |
11 |
cacagacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721382 |
cacacacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
26721283 |
T |
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| Q |
111 |
ctaaaatcaatcagaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacagca |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
26721282 |
ctaaaatcaatcagaacaacaaattactttcatttgtaatttaagaaaccaatttttagaataaaaattaaagacctaactaaatactttttgaacagca |
26721183 |
T |
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| Q |
211 |
aaaacagggcactgctgctaggccaaaacacaatcgcctata |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721182 |
aaaacagggcactgctgctaggccaaaacacaatcgcctata |
26721141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 2986501 - 2986258
Alignment:
| Q |
11 |
cacagacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2986501 |
cacacacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
2986402 |
T |
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| Q |
111 |
ctaaaa--tcaatcagaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacag |
208 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||| |
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| T |
2986401 |
ctaaaaactcaatcagaacaacaaattactttcatttgtaatttaagaaaccaatttttagaagaaaaattaaagacctaactaaatactttttgaacag |
2986302 |
T |
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| Q |
209 |
caaaaacagggcactgctgctaggccaaaacacaatcgcctata |
252 |
Q |
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| T |
2986301 |
caaaaacagggcactgctgctaggccaaaacacaatcgcctata |
2986258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 45117563 - 45117806
Alignment:
| Q |
11 |
cacagacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45117563 |
cacacacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
45117662 |
T |
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| Q |
111 |
ctaaaa--tcaatcagaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacag |
208 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||| |
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| T |
45117663 |
ctaaaaactcaatcagaacaacaaattactttcatttgtaatttaagaaaccaatttttagaagaaaaattaaagacctaactaaatactttttgaacag |
45117762 |
T |
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| Q |
209 |
caaaaacagggcactgctgctaggccaaaacacaatcgcctata |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45117763 |
caaaaacagggcactgctgctaggccaaaacacaatcgcctata |
45117806 |
T |
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Back To:
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