View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9659_low_16 (Length: 244)
Name: NF9659_low_16
Description: NF9659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9659_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 28827338 - 28827561
Alignment:
| Q |
4 |
tggagaagcagagaagaaaatgatagagattgctttgttgtgtactcaagcatcagctggaatgagaccaacgatgtctgaagtagtagtcctcctccaa |
103 |
Q |
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| T |
28827338 |
tggagaagaagtgaagaaaatgatagagattgctttgttgtgtactcaagcatcagctggaatgagaccaacgatgtctgaagtagtagtcctcctccaa |
28827437 |
T |
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| Q |
104 |
accaggagcttagtggagcacctgcaaccaactatgcctgtgtttgtagaaacgaatcttaggtctcgtgaaggccactctacctcaactggttcttcta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28827438 |
accaggagcttagtggagcacctgcaaccaactatgcctgtgtttgtagaaacgaatcttaggtctcgtgaaggccactctacctcaactggttcttcta |
28827537 |
T |
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| Q |
204 |
cgtctaatgccactgcctcctttt |
227 |
Q |
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|||||||||||||||||||||||| |
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| T |
28827538 |
cgtctaatgccactgcctcctttt |
28827561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 28836677 - 28836900
Alignment:
| Q |
4 |
tggagaagcagagaagaaaatgatagagattgctttgttgtgtactcaagcatcagctggaatgagaccaacgatgtctgaagtagtagtcctcctccaa |
103 |
Q |
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|||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| |
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| T |
28836677 |
tggagaagaagtgaagaaaatgatagagattgctctgttgtgtactcaagcatcagctggaatgagaccaacaatgtctgaagttgtagtcctccttcaa |
28836776 |
T |
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| Q |
104 |
accaggagcttagtggagcacctgcaaccaactatgcctgtgtttgtagaaacgaatcttaggtctcgtgaaggccactctacctcaactggttcttcta |
203 |
Q |
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| T |
28836777 |
accagaagcttagcggagcacctgcaaccaactatgcctgtgtttgtagaaacgaatcttaggtctcgtgaaggccactctacctcaactggttcctcta |
28836876 |
T |
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| Q |
204 |
cgtctaatgccactgcctcctttt |
227 |
Q |
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|||||||||||||||||||||||| |
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| T |
28836877 |
cgtctaatgccactgcctcctttt |
28836900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 28839322 - 28839522
Alignment:
| Q |
16 |
gaagaaaatgatagagattgctttgttgtgtactcaagcatcagctggaatgagaccaacgatgtctgaagtagtagtcctcctccaaaccaggagctta |
115 |
Q |
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|||||||||||||| ||||||||| || ||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
28839322 |
gaagaaaatgatagtgattgctttattatgtactcaagcatcagctggaatgaaaccaacaatgtctgaagtagtagtcct---ccaaaccaggagctta |
28839418 |
T |
|
| Q |
116 |
gtggagcacctgcaaccaactatgcctgtgtttgtagaaacgaatcttaggtctcgtgaaggccactctacctcaactggttcttctacgtctaatgcca |
215 |
Q |
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| T |
28839419 |
gtggagcacttgcaaccaactatgcatgtgtttgtagaaacgaatcttaggtctcatgaaggccactctacctcaactggttcttctacctctaatgcta |
28839518 |
T |
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| Q |
216 |
ctgc |
219 |
Q |
| |
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|||| |
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| T |
28839519 |
ctgc |
28839522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 28831276 - 28831371
Alignment:
| Q |
17 |
aagaaaatgatagagattgctttgttgtgtactcaagcatcagctggaatgagaccaacgatgtctgaagtagtagtcctcctccaaaccaggagc |
112 |
Q |
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||||||||||||||||||||||| | || | ||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||| |
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| T |
28831276 |
aagaaaatgatagagattgctttactatgcattcaagcatcagctggaatgagaccaacattgtctgaagtagaagtcctactccaaaccaggagc |
28831371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 1465919 - 1465800
Alignment:
| Q |
104 |
accaggagcttagtggagcacctgcaaccaactatgcctgtgtttgtagaaacgaatcttaggtctcgtgaaggccactctacctcaactggttcttcta |
203 |
Q |
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|||||||| ||||||||||||||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
1465919 |
accaggagattagtggagcacctgaaaccaactatgtctatgtttgtagaaacaaatcttaggtctcgtgaaggccactctacctcaacttgttattcta |
1465820 |
T |
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| Q |
204 |
cgtctaatgccactgcctcc |
223 |
Q |
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| |||||||| ||||||||| |
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| T |
1465819 |
catctaatgctactgcctcc |
1465800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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