View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9659_low_17 (Length: 239)
Name: NF9659_low_17
Description: NF9659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9659_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 28827291 - 28827066
Alignment:
| Q |
1 |
tgcctctctcatgcagtttccatgtctattcagtgaaaatcaaagaccatatgttaaaatattaagagattatccctctggtcctttttgtaagagtcat |
100 |
Q |
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| T |
28827291 |
tgcctctctcatgcagtttccatgtctattcagtgaaaatcaaaggccatatgttaaaatattaagagattatccctctggtcctttttgtaagagtcat |
28827192 |
T |
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| Q |
101 |
tttgggttcttttgttcttaatgtaacaaacaaaagtacaattttaaagtgtattaattgttaagtttcccttacattagttgtttttaactagcaataa |
200 |
Q |
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| T |
28827191 |
tttgggttcttttgttcttaatgtaacaaacaaaagtacaattttaaagtgtattaattgttaagtttcccttacattagttgtttttaactagcaataa |
28827092 |
T |
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| Q |
201 |
ctacttttaggacagctctttgatct |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
28827091 |
ctacttttaggacagctctttgatct |
28827066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28836630 - 28836578
Alignment:
| Q |
1 |
tgcctctctcatgcagtttccatgtctattcagtgaaaatcaaagaccatatg |
53 |
Q |
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|||||||||||||||||||||||| || || ||||||| ||||| |||||||| |
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| T |
28836630 |
tgcctctctcatgcagtttccatgactgttaagtgaaattcaaaaaccatatg |
28836578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1466016 - 1466079
Alignment:
| Q |
1 |
tgcctctctcatgcagtttccatgtctattcagtgaaaatcaaagaccatatgttaaaatatta |
64 |
Q |
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||||||||||||||||||||||||||| || || |||| ||||||| |||||| || ||||||| |
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| T |
1466016 |
tgcctctctcatgcagtttccatgtctgtttagcgaaagtcaaagatcatatgatacaatatta |
1466079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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