View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9659_low_18 (Length: 233)
Name: NF9659_low_18
Description: NF9659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9659_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 33596165 - 33596373
Alignment:
| Q |
11 |
tggtgttgatggtacaaaggacatgtctaaaggcaatgcaatattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
110 |
Q |
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||||||||||||||||||| ||||||| || || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33596165 |
tggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
33596264 |
T |
|
| Q |
111 |
ctcacctggctaattcccagtgaaattttccccttaaaattcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
210 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33596265 |
ctcacctggctaattccaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
33596364 |
T |
|
| Q |
211 |
cacaaacat |
219 |
Q |
| |
|
||||||||| |
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| T |
33596365 |
cacaaacat |
33596373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 33603296 - 33603504
Alignment:
| Q |
11 |
tggtgttgatggtacaaaggacatgtctaaaggcaatgcaatattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
110 |
Q |
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||||||||||||||||||| ||||||| || || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33603296 |
tggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
33603395 |
T |
|
| Q |
111 |
ctcacctggctaattcccagtgaaattttccccttaaaattcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
210 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33603396 |
ctcacctggctaattccaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
33603495 |
T |
|
| Q |
211 |
cacaaacat |
219 |
Q |
| |
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||||||||| |
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| T |
33603496 |
cacaaacat |
33603504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 33588993 - 33589201
Alignment:
| Q |
11 |
tggtgttgatggtacaaaggacatgtctaaaggcaatgcaatattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
110 |
Q |
| |
|
||||||||||||||||||| ||||||| || || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33588993 |
tggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
33589092 |
T |
|
| Q |
111 |
ctcacctggctaattcccagtgaaattttccccttaaaattcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
210 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33589093 |
ctcacctggctaattccaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttatgttat |
33589192 |
T |
|
| Q |
211 |
cacaaacat |
219 |
Q |
| |
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||||||||| |
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| T |
33589193 |
cacaaacat |
33589201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 33618874 - 33619082
Alignment:
| Q |
11 |
tggtgttgatggtacaaaggacatgtctaaaggcaatgcaatattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
110 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||||||||| |||||||||| || | ||||||||| | ||||||||||||||||| ||||||||| |
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| T |
33618874 |
tggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactctgcaggttttggttggtcatggggtcca |
33618973 |
T |
|
| Q |
111 |
ctcacctggctaattcccagtgaaattttccccttaaaattcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
210 |
Q |
| |
|
| || ||||| ||||| ||||| |||||||| ||||| | ||||| || |||||||| ||||| |||| ||| ||||||||||| | |||||||||| |
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| T |
33618974 |
ttaacatggcttattccaagtgagattttcccagtaaaaataagaaccacaggacaaagcatagctgttgctgtgcaattcataataatctttgtgttat |
33619073 |
T |
|
| Q |
211 |
cacaaacat |
219 |
Q |
| |
|
| ||||||| |
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|
| T |
33619074 |
cgcaaacat |
33619082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 33609592 - 33609800
Alignment:
| Q |
11 |
tggtgttgatggtacaaaggacatgtctaaaggcaatgcaatattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
110 |
Q |
| |
|
||||||||| |||||||| ||||| || || || ||||||||||| |||||||| || ||||||| ||| | || |||||||||||||| |||||||| |
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| T |
33609592 |
tggtgttgacggtacaaacgacatatccaaggggaatgcaatattagtattggtgctattatgtttatactctgctggttttggttggtcatggggtcct |
33609691 |
T |
|
| Q |
111 |
ctcacctggctaattcccagtgaaattttccccttaaaattcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
210 |
Q |
| |
|
|| || ||||| ||||| ||||| |||||||| |||| | ||||| || |||||||| ||||| ||| | ||||||||||||| | |||||| ||| |
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| T |
33609692 |
ctaacatggcttattccaagtgagattttcccagtaaatataagaaccacaggacaaagcatagctattgctatacaattcataatagtatttgtgctat |
33609791 |
T |
|
| Q |
211 |
cacaaacat |
219 |
Q |
| |
|
||||||||| |
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|
| T |
33609792 |
cacaaacat |
33609800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 33628077 - 33628285
Alignment:
| Q |
11 |
tggtgttgatggtacaaaggacatgtctaaaggcaatgcaatattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
110 |
Q |
| |
|
|||||||||||||||||| ||||| || || ||||||||||||||||||||||| || | |||||||| || || |||||||||| ||| ||| |||| |
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|
| T |
33628077 |
tggtgttgatggtacaaatgacatatcaaagggcaatgcaatattggtattggtactaatgtgtttctatgctgcgggttttggtttgtcgtggagtcct |
33628176 |
T |
|
| Q |
111 |
ctcacctggctaattcccagtgaaattttccccttaaaattcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
210 |
Q |
| |
|
|| || ||||||||||| | ||| ||||| || |||| | |||| ||||||||||| ||||| |||| ||| || |||||||| | |||||||||| |
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| T |
33628177 |
ctaacatggctaattccaactgagatttttccagtaaatataagaagcactggacaaagcatagctgttgctgtgcatttcataatgatatttgtgttat |
33628276 |
T |
|
| Q |
211 |
cacaaacat |
219 |
Q |
| |
|
| ||||||| |
|
|
| T |
33628277 |
cgcaaacat |
33628285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 33563473 - 33563576
Alignment:
| Q |
72 |
tgtttctacgccgcaggttttggttggtcttggggtccactcacctggctaattcccagtgaaattttccccttaaaattcagaacaactggacaaagta |
171 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||| || ||| ||||||| ||||||||||| || || ||| ||||||||||||||||||| | |
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| T |
33563473 |
tgtttctactctgcaggttttggttggtcatggggtcctctattatggataattccaagtgaaatttttcctttgaaaatcagaacaactggacaaagca |
33563572 |
T |
|
| Q |
172 |
tagc |
175 |
Q |
| |
|
|||| |
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|
| T |
33563573 |
tagc |
33563576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 33623690 - 33623822
Alignment:
| Q |
11 |
tggtgttgatggtacaaaggacatgtctaaaggcaatgcaatattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
110 |
Q |
| |
|
|||||||||||||||||| ||||| || || ||||||||||||||| ||||||| || ||||||||| || || ||||| | || ||| ||| | || |
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| T |
33623690 |
tggtgttgatggtacaaatgacatatcaaagggcaatgcaatattgatattggtactaatatgtttctgtgctgcgggtttagatttgtcgtggagccct |
33623789 |
T |
|
| Q |
111 |
ctcacctggctaattcccagtgaaattttcccc |
143 |
Q |
| |
|
|| || ||||||||||| | ||| ||||||||| |
|
|
| T |
33623790 |
ctaacatggctaattccaactgagattttcccc |
33623822 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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