View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9659_low_22 (Length: 207)
Name: NF9659_low_22
Description: NF9659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9659_low_22 |
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| [»] scaffold0669 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 17592071 - 17591866
Alignment:
| Q |
1 |
tgtaatgttactctttctctgttttagcataggtgtttgatatcgagtacttctcaatcgttgtattaattgtactcttttgttttctatataatatata |
100 |
Q |
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| T |
17592071 |
tgtaatgttactctttctctgttttagcataggtgtttgatatcgagtacttctcaatcgttgtattaattgtactcttttgttttctatataatatata |
17591972 |
T |
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| Q |
101 |
tttgtcattcaaaataaaatgtaagcgataattgcattgttgtttggtttcnnnnnnnnnnnnnnnaaatgtaaaaatctactaactctgtttcaaattg |
200 |
Q |
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| T |
17591971 |
tttgtcattcaaaataaaatgtaagcgagaattgcattgttgtttggtttctttttttctttttttaaatgtaaaaatctactaactctgtttcaaattg |
17591872 |
T |
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| Q |
201 |
agtgtc |
206 |
Q |
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|||||| |
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| T |
17591871 |
agtgtc |
17591866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 17698384 - 17698292
Alignment:
| Q |
57 |
atcgttgtattaattgtactcttttgttttctatataatatatatttgtcattcaaaataaaatgtaagcgataattgca-ttgttgtttggtttc |
151 |
Q |
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| T |
17698384 |
atcgttgtattaattgtactccttcgttttctatataatat-tgtttctcattcaaaataaaatgtaa--gataattgcatttgttgtttggtttc |
17698292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 17725666 - 17725572
Alignment:
| Q |
6 |
tgttactctttctctgttttagcataggtgtttgatatcgagtacttct--caatcgttgtattaattgtactcttttgttttctatataatata |
98 |
Q |
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| T |
17725666 |
tgttactctttctctggtttagcttaggtgttggatatcgagtaatttttgtagttgttgtattaattgtactccttagttttcgatatactata |
17725572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 17737355 - 17737267
Alignment:
| Q |
56 |
aatcgttgtattaattgtactcttttgttttctatataatatatatttgtcattcaaaataaaatgtaagcgataattgcattgttgtttg |
146 |
Q |
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| T |
17737355 |
aatcgctgtgttaattgtactacttggttttcgacataatatacatttgtcatttaaaagaaaatataa--gttaattgcattgttgtttg |
17737267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0669 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0669
Description:
Target: scaffold0669; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 3140 - 3176
Alignment:
| Q |
59 |
cgttgtattaattgtactcttttgttttctatataat |
95 |
Q |
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| T |
3140 |
cgttgtattaattgtactcatttgttttctatataat |
3176 |
T |
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