View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9659_low_9 (Length: 396)

Name: NF9659_low_9
Description: NF9659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9659_low_9
NF9659_low_9
[»] chr7 (4 HSPs)
chr7 (174-386)||(41763972-41764185)
chr7 (100-174)||(22488522-22488596)
chr7 (281-367)||(41756122-41756208)
chr7 (18-58)||(22488440-22488480)
[»] chr4 (2 HSPs)
chr4 (100-173)||(8558030-8558103)
chr4 (18-58)||(8557948-8557988)
[»] chr6 (1 HSPs)
chr6 (126-180)||(13798461-13798515)
[»] chr3 (1 HSPs)
chr3 (103-174)||(33508290-33508361)
[»] chr2 (1 HSPs)
chr2 (126-175)||(11210277-11210326)
[»] chr5 (1 HSPs)
chr5 (128-184)||(31367683-31367739)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 174 - 386
Target Start/End: Original strand, 41763972 - 41764185
Alignment:
Q  174 aataaaaaatgatccaagtcnnnnnnntttaacatgagtatttgagacatttaaatatacttttgacccaacacaacttctatgaatctaaa-tcttatg 272  Q
    ||||||||||||||||||||       |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41763972 aataaaaaatgatccaagtcaaaaaaatttaacatgaatatttgagacatttaaatatacttttgacccaacacaacttctatgaatctaaaatcttatg 41764071  T
Q  273 gttttcagcagaaaccaaacctggcaggaaagctcagcaacttagacagagtcgaagctgatctactacaagctagagctgcaataagaaaagcagtaaa 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41764072 gttttcagcagaaaccaaacctggcaggaaagctcagcaacttagacagagtcgaagctgatctactacaagctagagctgcaataagaaaagcagtaaa 41764171  T
Q  373 tggaaaacaaacac 386  Q
    ||||||||||||||    
T  41764172 tggaaaacaaacac 41764185  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 22488522 - 22488596
Alignment:
Q  100 catttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttatcctgtcgtgctatcaagcatttttca 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22488522 catttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttattctgtcgtgctatcaagcatttttca 22488596  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 281 - 367
Target Start/End: Original strand, 41756122 - 41756208
Alignment:
Q  281 cagaaaccaaacctggcaggaaagctcagcaacttagacagagtcgaagctgatctactacaagctagagctgcaataagaaaagca 367  Q
    ||||||||||||||  || ||||  |||||| ||||||||||  |||||||| ||||||||||||||||||||||||||||||||||    
T  41756122 cagaaaccaaacctaccaagaaaattcagcatcttagacagaaccgaagctggtctactacaagctagagctgcaataagaaaagca 41756208  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 22488440 - 22488480
Alignment:
Q  18 atccccacgacaatacacgacacacaaatcatgcggaaggc 58  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  22488440 atccccacgacaatacacaacacacaaatcatgcggaaggc 22488480  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 8558030 - 8558103
Alignment:
Q  100 catttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttatcctgtcgtgctatcaagcatttttc 173  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  8558030 catttcatcaaatggtttgaaatatgtcgtgtgcattcatgcatgttattctgtcgtgctatcaagcatttttc 8558103  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 8557948 - 8557988
Alignment:
Q  18 atccccacgacaatacacgacacacaaatcatgcggaaggc 58  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8557948 atccccacgacaatacacgacacacaaatcatgcggaaggc 8557988  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 13798461 - 13798515
Alignment:
Q  126 tcgtgtgcattcgtgcatgttatcctgtcgtgctatcaagcatttttcaataaaa 180  Q
    |||||||| ||||||| |||||   ||||||||||||||||||||||||||||||    
T  13798461 tcgtgtgccttcgtgcttgttaatatgtcgtgctatcaagcatttttcaataaaa 13798515  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 33508290 - 33508361
Alignment:
Q  103 ttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttatcctgtcgtgctatcaagcatttttca 174  Q
    ||||||||| || || | ||||||||||||| ||||||| ||| |   ||||||||||||||||||||||||    
T  33508290 ttcatcaaacggcttaagatatgtcgtgtgccttcgtgcttgtcactatgtcgtgctatcaagcatttttca 33508361  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 11210277 - 11210326
Alignment:
Q  126 tcgtgtgcattcgtgcatgttatcctgtcgtgctatcaagcatttttcaa 175  Q
    |||||||| ||||||| |||||   |||||||||||||||||||||||||    
T  11210277 tcgtgtgccttcgtgcttgttagtatgtcgtgctatcaagcatttttcaa 11210326  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 31367683 - 31367739
Alignment:
Q  128 gtgtgcattcgtgcatgttatcctgtcgtgctatcaagcatttttcaataaaaaatg 184  Q
    |||||| ||||||| |||||   ||||||||||||||||||||||||  ||||||||    
T  31367683 gtgtgccttcgtgcttgttagtatgtcgtgctatcaagcatttttcataaaaaaatg 31367739  T

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