View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9660_high_2 (Length: 472)
Name: NF9660_high_2
Description: NF9660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9660_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Original strand, 56402146 - 56402581
Alignment:
| Q |
19 |
agaagtgagacttagatccaaaggtattgattgtggaacaacttggccttttggtgtgattcacatttggcaaagggagctcaactcagaaaaagtggtc |
118 |
Q |
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| T |
56402146 |
agaagtgagacttagatccaaaggtattgattgtggaacaacttggccttttggtgtgattcacatttggcaaagggagctcaactcagaaaaagtggtc |
56402245 |
T |
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| Q |
119 |
attgaatcagatgcaattatgcaaaagttgttgttccgcattcatggatccactactgatttttaagaatatggaatctgttctagcaaacacggcaacc |
218 |
Q |
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| T |
56402246 |
attgaatcagatgcaattatgcaaaagttgttgttctgcattcatggatccactactgatttttaagaatatggaatctgttctagcaaacacggcaacc |
56402345 |
T |
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| Q |
219 |
actatgggtttccattaagttattattctcctctacatcatgttttaattgtgaagatctagatagattcagtttctttagcaggtccatgcgtatgctt |
318 |
Q |
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| T |
56402346 |
actatgggtttccattaagttattattctcctctacatcatgttttaattgtgaagatctagatagattcagtttctttagcaggtccatgcgtatgctt |
56402445 |
T |
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| Q |
319 |
tatgtattttagatagcgtgatttgttaatgatactaagggctagatgattttagcacaaaattgaaaacttttacagtgcccnnnnnnnnatcatgata |
418 |
Q |
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| T |
56402446 |
tatgtattttagatagcgtgatttgttaatgataccaagggctagatgattttagcacgaaattgaaaacttttacagtgcccttttttttatcatgata |
56402545 |
T |
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| Q |
419 |
tgccagacttgtgcattcaactcgcatggtaatgac |
454 |
Q |
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| T |
56402546 |
tgccagacttgtgcattcaactcgcatggtaatgac |
56402581 |
T |
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