View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9660_high_8 (Length: 252)
Name: NF9660_high_8
Description: NF9660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9660_high_8 |
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| [»] scaffold0274 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 41418058 - 41417843
Alignment:
| Q |
1 |
ctaataacggtatcatgtactgttattgtatcaaatattaatcactaattagcggtcaattacaaaaataagtaagatactagtagtacatagtttgaac |
100 |
Q |
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| T |
41418058 |
ctaataacggtatcatgtactgttattgtatcaaatattaatcactaattagcggtcagttacaaaaataagtaagatactagtagtacatagtttgaac |
41417959 |
T |
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| Q |
101 |
ataaatataggactaacaatagtatttattaatcgactaatcccaaaatcaataaacgattagtagcagaaatattctctggtctcaaatatggatatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41417958 |
ataaatataggactaacaatagtatttattaatcgactaatcccaaaattaataaaagattagtagcagaaatattctctggtctcaaatatggatatta |
41417859 |
T |
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| Q |
201 |
gtgttagtatttcaac |
216 |
Q |
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|||||||||||||||| |
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| T |
41417858 |
gtgttagtatttcaac |
41417843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 6007 - 5805
Alignment:
| Q |
15 |
atgtactgttattgtatcaaatattaatcactaattagcggtcaattacaaaaataagtaagatactagtagtacatagtttgaacataaatataggact |
114 |
Q |
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||||| ||||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||| |||| |
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| T |
6007 |
atgtattgttattgtattaaatactaatcactaattagcaaccaattacaaaaataagtatgatagtagaagtacatagtttgaacataaatataagact |
5908 |
T |
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| Q |
115 |
aacaatagtatttattaatcgactaatcccaaaatcaataaacgattagtagcagaaatattctctggtctcaaatatggatattagtgttagtatttca |
214 |
Q |
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| T |
5907 |
aaaaatattatttattaattgactaatcccaaaattaatcaacaatcagtagcagaaatattctctattttcaaatatggatattagtgttagtatttta |
5808 |
T |
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| Q |
215 |
acg |
217 |
Q |
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||| |
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| T |
5807 |
acg |
5805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 3284 - 3486
Alignment:
| Q |
15 |
atgtactgttattgtatcaaatattaatcactaattagcggtcaattacaaaaataagtaagatactagtagtacatagtttgaacataaatataggact |
114 |
Q |
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||||| ||||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||| |||| |
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| T |
3284 |
atgtattgttattgtattaaatactaatcactaattagcaaccaattacaaaaataagtatgatagtagaagtacatagtttgaacataaatataagact |
3383 |
T |
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| Q |
115 |
aacaatagtatttattaatcgactaatcccaaaatcaataaacgattagtagcagaaatattctctggtctcaaatatggatattagtgttagtatttca |
214 |
Q |
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|| |||| ||||||||||| ||||||||||||||| ||| ||| || ||||||||||||||||||| | |||||||||||||||||||||||||||| | |
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| T |
3384 |
aaaaatattatttattaattgactaatcccaaaattaatcaacaatcagtagcagaaatattctctattttcaaatatggatattagtgttagtatttta |
3483 |
T |
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| Q |
215 |
acg |
217 |
Q |
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||| |
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| T |
3484 |
acg |
3486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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