View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9660_low_1 (Length: 601)
Name: NF9660_low_1
Description: NF9660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9660_low_1 |
 | |
|
| [»] scaffold0144 (4 HSPs) |
| | |
|
| [»] scaffold1894 (2 HSPs) |
| | |
|
| [»] scaffold0534 (1 HSPs) |
| | |
|
| [»] scaffold0581 (1 HSPs) |
| | |
|
| [»] scaffold0104 (2 HSPs) |
| | |
|
| [»] scaffold0221 (4 HSPs) |
| | |
|
| [»] scaffold0455 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 61 - 593
Target Start/End: Complemental strand, 21162681 - 21162149
Alignment:
| Q |
61 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggacaaaaaccattccttgggttaaatggtttcagacgtacaacactaa |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21162681 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagtgtcagaaaccattccttgggttaaatggtttcagacgtacaacactaa |
21162582 |
T |
|
| Q |
161 |
tagtatttcagagtattactgcagatccaaacatgcactaaaattaaaaaaccatattgaactgaaacttacatattcaagactgttaggatcaatagct |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | |
|
|
| T |
21162581 |
tagtatttcagagtattactgcagatccaaacatgcactaaaattaaaaaaccatattgaactgaaacttacgtattctagactgttaggatcaatagtt |
21162482 |
T |
|
| Q |
261 |
ttccaatccaagtacttgaatttgcttagtctctcgatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaggtctttcaaggtcaacct |
360 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21162481 |
ttccaatccaagtacttgaacttgcttagtctctcgatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaggtttttcaaggtcaacct |
21162382 |
T |
|
| Q |
361 |
gtttatataaaaataaatcagtaaaatcaattattcagcttaatgaataaaataaaccattaatattcatggaatataatgcatacatagttaatcatgg |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21162381 |
gtttatataaaaataaatcagtaaaatcaattattcagcttaatgaataaaataaaccattaatattcatggaatataatgcatacatagttaatcatgg |
21162282 |
T |
|
| Q |
461 |
gtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccagacattgatcacaaagcatgacacccattcgtcttgttgaag |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21162281 |
gtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccagacattgatcacaaagcatgacacccattcgtcttgttgaag |
21162182 |
T |
|
| Q |
561 |
cgaccacaagtctatcctttccacagaataatc |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
21162181 |
cgaccacaagtctatcctttccacagaataatc |
21162149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 61 - 593
Target Start/End: Complemental strand, 44346680 - 44346148
Alignment:
| Q |
61 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggacaaaaaccattccttgggttaaatggtttcagacgtacaacactaa |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44346680 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagtgtcagaaaccattccttaggttaaatggtttcagacgtacaacactaa |
44346581 |
T |
|
| Q |
161 |
tagtatttcagagtattactgcagatccaaacatgcactaaaattaaaaaaccatattgaactgaaacttacatattcaagactgttaggatcaatagct |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
44346580 |
tagtatttcagagtattactgcagatccaaacatgcattaaaattaaaaaaccatattgaactgaaacttacatattctagactgttacggtcaatagct |
44346481 |
T |
|
| Q |
261 |
ttccaatccaagtacttgaatttgcttagtctctcgatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaggtctttcaaggtcaacct |
360 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
44346480 |
ttccaatccatgtatttgaacttgcttagtctctcaatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaagtttttcaaggtcaacct |
44346381 |
T |
|
| Q |
361 |
gtttatataaaaataaatcagtaaaatcaattattcagcttaatgaataaaataaaccattaatattcatggaatataatgcatacatagttaatcatgg |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44346380 |
gtttatataaaaataaatcagtaaaatcaattattcagcttaatgaataaaataaaccattaatattcatggaatataatgcatacatagttaatcatgg |
44346281 |
T |
|
| Q |
461 |
gtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccagacattgatcacaaagcatgacacccattcgtcttgttgaag |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
44346280 |
gtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccatgcattgatcacgaagcatgacacccattcgtcttgttgcag |
44346181 |
T |
|
| Q |
561 |
cgaccacaagtctatcctttccacagaataatc |
593 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| |
|
|
| T |
44346180 |
cgaccacaagtccatcctttccagagaataatc |
44346148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 44343721 - 44343628
Alignment:
| Q |
61 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggacaaaaaccattccttgggttaaatggtttcagacgtacaa |
154 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |||||||||||||||||| | | ||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
44343721 |
tgcagttccaatgaaaacaattatgtacatcgaatggttttgtaagacaactgtctgaaaccattccttgtgcaaaatggtttcagacatacaa |
44343628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 21158498 - 21158405
Alignment:
| Q |
61 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggacaaaaaccattccttgggttaaatggtttcagacgtacaa |
154 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||||||||||||||| | | ||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
21158498 |
tgcagttccaataaaaacaattatgtacatcgaatggttttgtaagacaactgtctgaaaccattccttgtgcaaaatggtttcagacatacaa |
21158405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 44345881 - 44345843
Alignment:
| Q |
64 |
agttccaaagaaaactattatgtacatcaaatggttttg |
102 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44345881 |
agttccaaagaaaactattatttacatcaaatggttttg |
44345843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 21161923 - 21161883
Alignment:
| Q |
64 |
agttccaaagaaaactattatgtacatcaaatggttttgta |
104 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
21161923 |
agttctaaagaaaactattatttacatcaaatggtattgta |
21161883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 61 - 593
Target Start/End: Original strand, 11977120 - 11977652
Alignment:
| Q |
61 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggacaaaaaccattccttgggttaaatggtttcagacgtacaacactaa |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11977120 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagtgtcagaaaccattccttgggttaaatggtttcagacgtacaacactaa |
11977219 |
T |
|
| Q |
161 |
tagtatttcagagtattactgcagatccaaacatgcactaaaattaaaaaaccatattgaactgaaacttacatattcaagactgttaggatcaatagct |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
11977220 |
tagtatttcagagtattactgcagatccaaacatgcactaaaattaaaaaaccatattgaactgaaatttacatattctagactgttagggtcaatagct |
11977319 |
T |
|
| Q |
261 |
ttccaatccaagtacttgaatttgcttagtctctcgatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaggtctttcaaggtcaacct |
360 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11977320 |
ttccaatccaagaacttgaacttgcttagtctctcgatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaggtttttcaaggtcaacct |
11977419 |
T |
|
| Q |
361 |
gtttatataaaaataaatcagtaaaatcaattattcagcttaatgaataaaataaaccattaatattcatggaatataatgcatacatagttaatcatgg |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11977420 |
gtttatataaaaataaatcagtaaaatcaattattcagcttaatgaataaaataaaccattaatattcatggaatataatgcatacatagttaatcatgg |
11977519 |
T |
|
| Q |
461 |
gtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccagacattgatcacaaagcatgacacccattcgtcttgttgaag |
560 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11977520 |
gtgtaaccaatcttgtcatcttgtctctttgttgattccagtttaagcagttaacccagacattgatcacaaagcatgacacccattcgtcttgttgaag |
11977619 |
T |
|
| Q |
561 |
cgaccacaagtctatcctttccacagaataatc |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11977620 |
cgaccacaagtctatcctttccacagaataatc |
11977652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 11976739 - 11976817
Alignment:
| Q |
61 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggacaaaaaccattccttgggttaaatg |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| |
|
|
| T |
11976739 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagtgtcagaaaccattccttgggttaaatg |
11976817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 11979983 - 11980076
Alignment:
| Q |
61 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggacaaaaaccattccttgggttaaatggtttcagacgtacaa |
154 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |||||||||||||||||| | | ||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
11979983 |
tgcagttccaatgaaaacaattatgtacatcgaatggttttgtaagacaactgtctgaaaccattccttgtgcaaaatggtttcagacatacaa |
11980076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 11977878 - 11977918
Alignment:
| Q |
64 |
agttccaaagaaaactattatgtacatcaaatggttttgta |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11977878 |
agttccaaagaaaactattatttacatcaaatggttttgta |
11977918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 63 - 593
Target Start/End: Complemental strand, 18244 - 17714
Alignment:
| Q |
63 |
cagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggacaaaaaccattccttgggttaaatggtttcagacgtacaacactaata |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18244 |
cagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggtcagaaaccgtttcttgggttaaatggtttcagacatacaacactaata |
18145 |
T |
|
| Q |
163 |
gtatttcagagtattactgcagatccaaacatgcactaaaattaaaaaaccatattgaactgaaacttacatattcaagactgttaggatcaatagcttt |
262 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
18144 |
gtatttcagagtattactgtagatccaaacatgcactaaaattaaaaaaccatattgaactgaaacttacatattctagactgttagggtcaatagcttt |
18045 |
T |
|
| Q |
263 |
ccaatccaagtacttgaatttgcttagtctctcgatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaggtctttcaaggtcaacctgt |
362 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18044 |
ccaatccaagtacttgaacttgcttagtctctcgatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaggtctttcaagttcaacctgt |
17945 |
T |
|
| Q |
363 |
ttatataaaaataaatcagtaaaatcaattattcagcttaatgaataaaataaaccattaatattcatggaatataatgcatacatagttaatcatgggt |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17944 |
ttatataaaaataaatcagtaaaatcaattattcagcttaatgaataaactaaaccattaatattcatggaatataatgcatacatagttaatcatgggt |
17845 |
T |
|
| Q |
463 |
gtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccagacattgatcacaaagcatgacacccattcgtcttgttgaagcg |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17844 |
gtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgatccagacattgatcacaaagcatgacacccatttgtcttgttgaagcg |
17745 |
T |
|
| Q |
563 |
accacaagtctatcctttccacagaataatc |
593 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
17744 |
accacaagtctatcctttccacaaaataatc |
17714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 18569 - 18487
Alignment:
| Q |
61 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggacaaaaaccattccttgggttaaatggttt |
143 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
18569 |
tgcagctccaaagaaaactattatgtacatcaaatggttttgtaagacaagtgtcagaaaccattccttgggttaaatggttt |
18487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 15467 - 15374
Alignment:
| Q |
61 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggacaaaaaccattccttgggttaaatggtttcagacgtacaa |
154 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |||||||||||||||||| | | ||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
15467 |
tgcagttccaatgaaaacaattatgtacatcgaatggttttgtaagacaactgtctgaaaccattccttgtgcaaaatggtttcagacatacaa |
15374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 17488 - 17448
Alignment:
| Q |
64 |
agttccaaagaaaactattatgtacatcaaatggttttgta |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17488 |
agttccaaagaaaactattatttacatcaaatggttttgta |
17448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 453; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 61 - 593
Target Start/End: Complemental strand, 22036529 - 22035997
Alignment:
| Q |
61 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggacaaaaaccattccttgggttaaatggtttcagacgtacaacactaa |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22036529 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagtgtcagaaaccattccttaggttaaatggtttcagacgtacaacactaa |
22036430 |
T |
|
| Q |
161 |
tagtatttcagagtattactgcagatccaaacatgcactaaaattaaaaaaccatattgaactgaaacttacatattcaagactgttaggatcaatagct |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
22036429 |
tagtatttcagagtattactgcagatccaaacatgcattaaaattaaaaaaccatattgaactgaaacttacatattctagactgttacggtcaatagct |
22036330 |
T |
|
| Q |
261 |
ttccaatccaagtacttgaatttgcttagtctctcgatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaggtctttcaaggtcaacct |
360 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
22036329 |
ttccaatccatgtatttgaacttgcttagtctctcaatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaagtttttcaaggtcaacct |
22036230 |
T |
|
| Q |
361 |
gtttatataaaaataaatcagtaaaatcaattattcagcttaatgaataaaataaaccattaatattcatggaatataatgcatacatagttaatcatgg |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22036229 |
gtttatataaaaataaatcagtaaaatcaattattcagcttaatgaataaaataaaccattaatattcatggaatataatgcatacatagttaatcatgg |
22036130 |
T |
|
| Q |
461 |
gtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccagacattgatcacaaagcatgacacccattcgtcttgttgaag |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
22036129 |
gtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccatgcattgatcacgaagcatgacacccattcgtcttgttgcag |
22036030 |
T |
|
| Q |
561 |
cgaccacaagtctatcctttccacagaataatc |
593 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| |
|
|
| T |
22036029 |
cgaccacaagtccatcctttccagagaataatc |
22035997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 420 - 572
Target Start/End: Complemental strand, 18761453 - 18761301
Alignment:
| Q |
420 |
ttaatattcatggaatataatgcatacatagttaatcatgggtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccag |
519 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| || || | ||||||||||||||||||| || || || |||||||||| || ||||| ||||||||| |
|
|
| T |
18761453 |
ttaacattcatggaatgtaatgcatacataattgatgactagtgtaaccagtcttgtcattttttcatttggttgattccaattcaagcaattgacccag |
18761354 |
T |
|
| Q |
520 |
acattgatcacaaagcatgacacccattcgtcttgttgaagcgaccacaagtc |
572 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| |||| |||||| | ||||||||| |
|
|
| T |
18761353 |
acatttatcacgaagcatgacactcattcatctttttgaagtgtccacaagtc |
18761301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 22033570 - 22033477
Alignment:
| Q |
61 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggacaaaaaccattccttgggttaaatggtttcagacgtacaa |
154 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |||||||||||||||||| | | ||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
22033570 |
tgcagttccaatgaaaacaattatgtacatcgaatggttttgtaagacaactgtctgaaaccattccttgtgcaaaatggtttcagacatacaa |
22033477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 247 - 372
Target Start/End: Complemental strand, 18761623 - 18761498
Alignment:
| Q |
247 |
taggatcaatagctttccaatccaagtacttgaatttgcttagtctctcgatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaggtct |
346 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||| || | |||||||||||||||||| | ||||| |||| || || | || | |||| ||||||| |
|
|
| T |
18761623 |
tagggtcaatagctttccaatccatgtatttgaactttttcagtctctcgatgaatcttttccatgcaactggtttcgttgtatctatggcatcaggtct |
18761524 |
T |
|
| Q |
347 |
ttcaaggtcaacctgtttatataaaa |
372 |
Q |
| |
|
||| | |||||||||||||| ||||| |
|
|
| T |
18761523 |
ttccatgtcaacctgtttatctaaaa |
18761498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 22035730 - 22035692
Alignment:
| Q |
64 |
agttccaaagaaaactattatgtacatcaaatggttttg |
102 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22035730 |
agttccaaagaaaactattatttacatcaaatggttttg |
22035692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1894 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: scaffold1894
Description:
Target: scaffold1894; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 183 - 593
Target Start/End: Original strand, 1 - 411
Alignment:
| Q |
183 |
agatccaaacatgcactaaaattaaaaaaccatattgaactgaaacttacatattcaagactgttaggatcaatagctttccaatccaagtacttgaatt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
1 |
agatccaaacatgcactaaaattaaaaaaccatattgaactgaaacttacatattctagactgttagggtcaatagctttccaatccaagtacttgaact |
100 |
T |
|
| Q |
283 |
tgcttagtctctcgatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaggtctttcaaggtcaacctgtttatataaaaataaatcagt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
101 |
tgcttagtctctcgatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaggtatttcaagatcaacctgtttatataaaaataaatcagt |
200 |
T |
|
| Q |
383 |
aaaatcaattattcagcttaatgaataaaataaaccattaatattcatggaatataatgcatacatagttaatcatgggtgtaaccagtcttgtcatctt |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
201 |
aaaatcaattattcagcttaatgaataaaataaaccattaatattcatggaatataatgcatacatagttaatcatgggtgtaaccagtcttgtcatctt |
300 |
T |
|
| Q |
483 |
gtctctttgttgattccagtttaagcagttgacccagacattgatcacaaagcatgacacccattcgtcttgttgaagcgaccacaagtctatcctttcc |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
301 |
gtctctttgttgattccagtttaagcagttgatccagacattgatcacaaagcatgacacccatttgtcttgttgaagcgaccacaagtctatcctttcc |
400 |
T |
|
| Q |
583 |
acagaataatc |
593 |
Q |
| |
|
||| ||||||| |
|
|
| T |
401 |
acaaaataatc |
411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1894; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 637 - 677
Alignment:
| Q |
64 |
agttccaaagaaaactattatgtacatcaaatggttttgta |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
637 |
agttccaaagaaaactattatttacatcaaatggttttgta |
677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 61 - 373
Target Start/End: Original strand, 37224996 - 37225308
Alignment:
| Q |
61 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggacaaaaaccattccttgggttaaatggtttcagacgtacaacactaa |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37224996 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggtcagaaaccattcctcgggttaaatggtttcagacgtacaacactaa |
37225095 |
T |
|
| Q |
161 |
tagtatttcagagtattactgcagatccaaacatgcactaaaattaaaaaaccatattgaactgaaacttacatattcaagactgttaggatcaatagct |
260 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37225096 |
tagtattttagagtattactgcagatccaaacatgcactaaaattaaaaaaccatattgaactgaaacttacatattcaagactgataggatcaatagct |
37225195 |
T |
|
| Q |
261 |
ttccaatccaagtacttgaatttgcttagtctctcgatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaggtctttcaaggtcaacct |
360 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37225196 |
ttccaatccaagtacttgaacttgcttagtctctcgatgaatcttgtgaatgcagctgggttatttttgtcaaaggcaccaggtctttcaaggtcaacct |
37225295 |
T |
|
| Q |
361 |
gtttatataaaaa |
373 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37225296 |
gtttatataaaaa |
37225308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 420 - 572
Target Start/End: Original strand, 15993494 - 15993646
Alignment:
| Q |
420 |
ttaatattcatggaatataatgcatacatagttaatcatgggtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccag |
519 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| || | | ||||||||||||||||| || || || || ||||||||||||| ||||| ||||||||| |
|
|
| T |
15993494 |
ttaacattcatggaatgtaatgcatacataattgaagaatggtgtaaccagtcttgttattttttcatttggttgattccagttcaagcaattgacccag |
15993593 |
T |
|
| Q |
520 |
acattgatcacaaagcatgacacccattcgtcttgttgaagcgaccacaagtc |
572 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||||| ||| | ||||||||| |
|
|
| T |
15993594 |
acatttatcacgaagcatgacacccattcatcttgttaaagtgtccacaagtc |
15993646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 420 - 580
Target Start/End: Original strand, 19847043 - 19847203
Alignment:
| Q |
420 |
ttaatattcatggaatataatgcatacatagttaatcatgggtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccag |
519 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||| || || | |||||||||||||||||||| || || || ||||| |||| || ||||| ||||||||| |
|
|
| T |
19847043 |
ttaacattaatggaatgtaatgcatacataatttatgaatggtgtaaccagtcttgtcattttttcatttggttgactccaattcaagcaattgacccag |
19847142 |
T |
|
| Q |
520 |
acattgatcacaaagcatgacacccattcgtcttgttgaagcgaccacaagtctatccttt |
580 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||| |||||| |||||||||||| |||||| |
|
|
| T |
19847143 |
gcatttatcacgaagcatgacacccattcatctttttgaagtgaccacaagtctctccttt |
19847203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 420 - 560
Target Start/End: Complemental strand, 15991450 - 15991309
Alignment:
| Q |
420 |
ttaatattcatggaatataatgcatacatagttaatcatgggtgtaaccagtcttgtcatcttgtctctttg-ttgattccagtttaagcagttgaccca |
518 |
Q |
| |
|
|||| ||||||||||| |||||||||| || || || | ||||||||||||||||| || || | |||| |||||||||||| ||||| |||||| | |
|
|
| T |
15991450 |
ttaacattcatggaatgtaatgcatacctaattgatgaatggtgtaaccagtcttgttatttttttcatttggttgattccagttcaagcaattgaccaa |
15991351 |
T |
|
| Q |
519 |
gacattgatcacaaagcatgacacccattcgtcttgttgaag |
560 |
Q |
| |
|
| |||| ||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
15991350 |
ggcatttatcacgaagcatgacacccattcatctttttgaag |
15991309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 15993285 - 15993391
Alignment:
| Q |
208 |
aaaaccatattgaactgaaacttacatattcaagactgttaggatcaatagctttccaatccaagtacttgaatttgcttagtctctcgatgaatcttgt |
307 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||| |||| |||||||| |||||||||| ||| ||||| || | |||||||||||||||||| | |
|
|
| T |
15993285 |
aaaactatattgaactgagtcttacatattctagacttgtagggtcaatagccttccaatccatgtatttgaactttttcagtctctcgatgaatctttt |
15993384 |
T |
|
| Q |
308 |
gaatgca |
314 |
Q |
| |
|
| ||||| |
|
|
| T |
15993385 |
gcatgca |
15993391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 372
Target Start/End: Original strand, 19846834 - 19846998
Alignment:
| Q |
208 |
aaaaccatattgaactgaaacttacatattcaagactgttaggatcaatagctttccaatccaagtacttgaatttgcttagtctctcgatgaatcttgt |
307 |
Q |
| |
|
||||| ||||||| |||| ||||||||||| ||||| |||| |||||||| |||||||||| ||| |||||||| | ||||| | ||||||||| | |
|
|
| T |
19846834 |
aaaactatattgagctgagtcttacatattctagacttgtagggtcaatagccttccaatccatgtatttgaattttttcagtcttccaatgaatctttt |
19846933 |
T |
|
| Q |
308 |
gaatgcagctgggttatttttgtcaaaggcaccaggtctttcaaggtcaacctgtttatataaaa |
372 |
Q |
| |
|
||||| ||| ||| || | || | |||| |||||||||| | |||||| ||||||||||||| |
|
|
| T |
19846934 |
acatgcaactgagtttgttatatctagggcatcaggtctttccaagtcaacttgtttatataaaa |
19846998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 420 - 580
Target Start/End: Complemental strand, 7881 - 7721
Alignment:
| Q |
420 |
ttaatattcatggaatataatgcatacatagttaatcatgggtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccag |
519 |
Q |
| |
|
|||| ||| ||||||| |||| |||||||| || || | ||||||||||||| |||||| || || || ||||| ||||||| ||||| ||||||||| |
|
|
| T |
7881 |
ttaacattaatggaatgtaattcatacataatttatgaatggtgtaaccagtcgtgtcattttttcatttggttgactccagttcaagcaattgacccag |
7782 |
T |
|
| Q |
520 |
acattgatcacaaagcatgacacccattcgtcttgttgaagcgaccacaagtctatccttt |
580 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |
|
|
| T |
7781 |
gcatttatcacaaagcatgacacccattcgtctttttgaagtgaccacaagtctctccttt |
7721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 420 - 572
Target Start/End: Complemental strand, 9560380 - 9560228
Alignment:
| Q |
420 |
ttaatattcatggaatataatgcatacatagttaatcatgggtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccag |
519 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| || || | |||||||||||||||||||| || || || ||||||||||||| ||||| |||||||| |
|
|
| T |
9560380 |
ttaacattcatggaatgtaatgcatacataattgatgaatggtgtaaccagtcttgtcattttttcatttggttgattccagttcaagcaattgacccat |
9560281 |
T |
|
| Q |
520 |
acattgatcacaaagcatgacacccattcgtcttgttgaagcgaccacaagtc |
572 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||| |||||| | ||||||||| |
|
|
| T |
9560280 |
gcatttatcacgaagcatgacacccattcatctttttgaagtgtccacaagtc |
9560228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 372
Target Start/End: Complemental strand, 9560569 - 9560425
Alignment:
| Q |
228 |
cttacatattcaagactgttaggatcaatagctttccaatccaagtacttgaatttgcttagtctctcgatgaatcttgtgaatgcagctgggttatttt |
327 |
Q |
| |
|
||||||||||| ||||| |||| |||||||| |||||||||| ||| ||||| || | |||||||||||||||||| || ||||| |||| || || |
|
|
| T |
9560569 |
cttacatattctagacttgtagggtcaatagccttccaatccatgtatttgaactttttcagtctctcgatgaatcttttgcatgcaactggtttcgtta |
9560470 |
T |
|
| Q |
328 |
tgtcaaaggcaccaggtctttcaaggtcaacctgtttatataaaa |
372 |
Q |
| |
|
| | | |||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
9560469 |
tatttagggcattaggtctttccatgtcaacctgtttatataaaa |
9560425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 420 - 580
Target Start/End: Original strand, 1293 - 1453
Alignment:
| Q |
420 |
ttaatattcatggaatataatgcatacatagttaatcatgggtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccag |
519 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||| || | | ||||||||||| | |||||| || | || ||||| ||||||||||||| | ||||||| |
|
|
| T |
1293 |
ttaacattaatggaatgtaatgcatacataatttaggaatggtgtaaccagccgtgtcatttttgcatttggttgactccagtttaagcaatcgacccag |
1392 |
T |
|
| Q |
520 |
acattgatcacaaagcatgacacccattcgtcttgttgaagcgaccacaagtctatccttt |
580 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |
|
|
| T |
1393 |
gcatttatcacaaagcatgacacccattcgtctttttgaagtgaccacaagtctctccttt |
1453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0104 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: scaffold0104
Description:
Target: scaffold0104; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 420 - 580
Target Start/End: Complemental strand, 8547 - 8387
Alignment:
| Q |
420 |
ttaatattcatggaatataatgcatacatagttaatcatgggtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccag |
519 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||| | || | ||||||||||||| |||||| || || || ||||| ||||||| ||||| ||||||||| |
|
|
| T |
8547 |
ttaacattaatggaatgtaatgcatacataagttatgaatggtgtaaccagtcgtgtcattttttcatttggttgaatccagttcaagcaattgacccag |
8448 |
T |
|
| Q |
520 |
acattgatcacaaagcatgacacccattcgtcttgttgaagcgaccacaagtctatccttt |
580 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |||||| |||||||||||| |||||| |
|
|
| T |
8447 |
gcatttatcacaaagcatgacacccatttatctttttgaagtgaccacaagtctctccttt |
8387 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0104; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 420 - 580
Target Start/End: Complemental strand, 19218 - 19058
Alignment:
| Q |
420 |
ttaatattcatggaatataatgcatacatagttaatcatgggtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccag |
519 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||| | || | ||||||||||||| |||||| || || || ||||| ||||||| ||||| ||||||||| |
|
|
| T |
19218 |
ttaacattaatggaatgtaatgcatacataagttatgaatggtgtaaccagtcgtgtcattttttcatttggttgaatccagttcaagcaattgacccag |
19119 |
T |
|
| Q |
520 |
acattgatcacaaagcatgacacccattcgtcttgttgaagcgaccacaagtctatccttt |
580 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |||||| |||||||||||| |||||| |
|
|
| T |
19118 |
gcatttatcacaaagcatgacacccatttatctttttgaagtgaccacaagtctctccttt |
19058 |
T |
|
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Target: scaffold0221 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 420 - 572
Target Start/End: Complemental strand, 26349 - 26195
Alignment:
| Q |
420 |
ttaatattcatggaatat--aatgcatacatagttaatcatgggtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgaccc |
517 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| || || | |||||||||||||||||||| || || || ||||||||||||| ||||| ||||||| |
|
|
| T |
26349 |
ttaacattcatggaatatgtaatgcatacatgattgatgaatggtgtaaccagtcttgtcattttttcatttggttgattccagttcaagcaattgaccc |
26250 |
T |
|
| Q |
518 |
agacattgatcacaaagcatgacacccattcgtcttgttgaagcgaccacaagtc |
572 |
Q |
| |
|
|| |||| ||||| ||||||||||||||||| |||| |||||| | ||||||||| |
|
|
| T |
26249 |
aggcatttatcacgaagcatgacacccattcatctttttgaagtgtccacaagtc |
26195 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 420 - 572
Target Start/End: Original strand, 27810 - 27964
Alignment:
| Q |
420 |
ttaatattcatggaatat--aatgcatacatagttaatcatgggtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgaccc |
517 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| || || | |||||||||||||||||||| || || || ||||||||||||| ||||| ||||||| |
|
|
| T |
27810 |
ttaacattcatggaatatgtaatgcatacatgattgatgaatggtgtaaccagtcttgtcattttttcatttggttgattccagttcaagcaattgaccc |
27909 |
T |
|
| Q |
518 |
agacattgatcacaaagcatgacacccattcgtcttgttgaagcgaccacaagtc |
572 |
Q |
| |
|
|| |||| ||||| ||||||||||||||||| |||| |||||| | ||||||||| |
|
|
| T |
27910 |
aggcatttatcacgaagcatgacacccattcatctttttgaagtgtccacaagtc |
27964 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 26562 - 26453
Alignment:
| Q |
208 |
aaaaccatattgaactgaaacttacatattcaagactgttaggatcaata---gctttccaatccaagtacttgaatttgcttagtctctcgatgaatct |
304 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||| |||| |||||| || |||||||||| ||| ||||| || | ||||||||||||||||| |
|
|
| T |
26562 |
aaaactatattgaactgagtcttacatattctagacttgtagggtcaataatagccttccaatccatgtatttgaactttttcagtctctcgatgaatct |
26463 |
T |
|
| Q |
305 |
tgtgaatgca |
314 |
Q |
| |
|
| || ||||| |
|
|
| T |
26462 |
tttgcatgca |
26453 |
T |
|
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Target: scaffold0221; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 27597 - 27706
Alignment:
| Q |
208 |
aaaaccatattgaactgaaacttacatattcaagactgttaggatcaata---gctttccaatccaagtacttgaatttgcttagtctctcgatgaatct |
304 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||| |||| |||||| || |||||||||| ||| ||||| || | ||||||||||||||||| |
|
|
| T |
27597 |
aaaactatattgaactgagtcttacatattctagacttgtagggtcaataatagccttccaatccatgtatttgaactttttcagtctctcgatgaatct |
27696 |
T |
|
| Q |
305 |
tgtgaatgca |
314 |
Q |
| |
|
| || ||||| |
|
|
| T |
27697 |
tttgcatgca |
27706 |
T |
|
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Target: scaffold0455 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 420 - 578
Target Start/End: Original strand, 2803 - 2961
Alignment:
| Q |
420 |
ttaatattcatggaatataatgcatacatagttaatcatgggtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccag |
519 |
Q |
| |
|
|||| ||| ||||||| |||||| |||||| || || | |||||||||| || |||||| || || || ||||| ||||||| ||||| |||||| || |
|
|
| T |
2803 |
ttaacattaatggaatgtaatgcgtacataatttatgaatggtgtaaccattcgtgtcattttttcatttggttgactccagttcaagcaattgacctag |
2902 |
T |
|
| Q |
520 |
acattgatcacaaagcatgacacccattcgtcttgttgaagcgaccacaagtctatcct |
578 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||| ||||| |||||| |||| |
|
|
| T |
2903 |
gcatttatcacaaagcatgacacccattcatctttttgaagtgaccataagtctctcct |
2961 |
T |
|
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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 420 - 580
Target Start/End: Original strand, 17226788 - 17226948
Alignment:
| Q |
420 |
ttaatattcatggaatataatgcatacatagttaatcatgggtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccag |
519 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||| || || | ||||||||||||| |||||| | || || ||||| ||||||| ||||| |||| |||| |
|
|
| T |
17226788 |
ttaacattaatggaatgtaatgcatacataatttatgaaaggtgtaaccagtcgtgtcattctttcatttggttgactccagttcaagcaattgaaccag |
17226887 |
T |
|
| Q |
520 |
acattgatcacaaagcatgacacccattcgtcttgttgaagcgaccacaagtctatccttt |
580 |
Q |
| |
|
|||| |||| ||| |||||||| ||||| |||| |||||| |||||||||||| |||||| |
|
|
| T |
17226888 |
gcatttatcataaaacatgacactcattcatctttttgaagtgaccacaagtctctccttt |
17226948 |
T |
|
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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 539
Target Start/End: Complemental strand, 17056376 - 17056257
Alignment:
| Q |
420 |
ttaatattcatggaatataatgcatacatagttaatcatgggtgtaaccagtcttgtcatcttgtctctttgttgattccagtttaagcagttgacccag |
519 |
Q |
| |
|
|||| ||| ||||||| |||| |||||||| || || | ||||||||||||| |||||| || || || ||||| ||||||| ||||| ||||||||| |
|
|
| T |
17056376 |
ttaacattaatggaatgtaattcatacataatttatgaatggtgtaaccagtcgtgtcattttttcatttggttgactccagttcaagcaattgacccag |
17056277 |
T |
|
| Q |
520 |
acattgatcacaaagcatga |
539 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
17056276 |
gcatttatcacaaagcatga |
17056257 |
T |
|
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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 580
Target Start/End: Complemental strand, 17052194 - 17052149
Alignment:
| Q |
535 |
catgacacccattcgtcttgttgaagcgaccacaagtctatccttt |
580 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| |||||| |
|
|
| T |
17052194 |
catgacacccattcgtctttttgaagtgaccacaagtctctccttt |
17052149 |
T |
|
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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 208 - 319
Target Start/End: Original strand, 10565609 - 10565720
Alignment:
| Q |
208 |
aaaaccatattgaactgaaacttacatattcaagactgttaggatcaatagctttccaatccaagtacttgaatttgcttagtctctcgatgaatcttgt |
307 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||| |||| |||||||| |||||||||| ||| ||||| || |||||||||||||||||||| | |
|
|
| T |
10565609 |
aaaactatattgaactgagtcttacatattctagacttgtagggtcaatagccttccaatccatgtatttgaacttttttagtctctcgatgaatctttt |
10565708 |
T |
|
| Q |
308 |
gaatgcagctgg |
319 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
10565709 |
gcatgcaactgg |
10565720 |
T |
|
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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 1732841 - 1732885
Alignment:
| Q |
136 |
aatggtttcagacgtacaacactaatagtatttcagagtattact |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1732841 |
aatggtttcagacgtacaacactaatagtatttcagagtattact |
1732885 |
T |
|
Back To:
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Target: scaffold0036 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 107063 - 107156
Alignment:
| Q |
61 |
tgcagttccaaagaaaactattatgtacatcaaatggttttgtaagacaagggacaaaaaccattccttgggttaaatggtttcagacgtacaa |
154 |
Q |
| |
|
||||||||||| |||||| ||||||| |||| |||||||||||||||||| | | ||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
107063 |
tgcagttccaatgaaaacaattatgtccatcgaatggttttgtaagacaactgtctgaaaccattccttgtgcaaaatggtttcagacatacaa |
107156 |
T |
|
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