View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9660_low_11 (Length: 405)
Name: NF9660_low_11
Description: NF9660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9660_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 387
Target Start/End: Complemental strand, 46229799 - 46229419
Alignment:
| Q |
7 |
agaagcagagatagcattgatggatccaaaagagtagctagggataacatccgtagctaatctaagtgaatcttgaacaagtgtggcagagtaagtcgaa |
106 |
Q |
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| T |
46229799 |
agaaccagagatagcattgatggatccaaaagagtagctagggataacatccgtagctaatctaagtgaatcttgaacaagtgtggcagagtaagtcgaa |
46229700 |
T |
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| Q |
107 |
cctgcgtaagatttgttgaaggaacatgcgccagagcccgtggctggacatgagagcccacggacctgactgcattgtggaacggaacactccaatggca |
206 |
Q |
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| T |
46229699 |
cctgcgtaagatttgttgaaggaacatgcgccagagcccgtggctggacatgagagcccacggacctgactgcattgtggaacggaacactccaatggca |
46229600 |
T |
|
| Q |
207 |
cataagtggtggaggcattgggcgagaaagttgttgcggagcaaccaatgcagccagagctagggataaaagcctcgtcggtgcttgtgtcaaggaccat |
306 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46229599 |
cataactggtggaggcattgggtgagaaagttgttgcggagcaaccaatgcagccagagctagggataaaagcctcgtcggtgcttgtgtcaaggaccat |
46229500 |
T |
|
| Q |
307 |
gaagaggagttgaccgggtgttccgattttaacacggactatgtagttgccaatgttgaaggcctggcccgaagcaattgg |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46229499 |
gaagaggagttgaccgggtgttccgattttaacacggactatgtagttgccaatgttgaaggcctggcccgaagcaattgg |
46229419 |
T |
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