View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9660_low_15 (Length: 341)
Name: NF9660_low_15
Description: NF9660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9660_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 47179050 - 47179356
Alignment:
| Q |
1 |
ttaggtgactgcagtgacttcaggtttttatgacagccgtatccgattttcatggtttcaatactaaaaatactttctacacattcaaacacaagttaga |
100 |
Q |
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| T |
47179050 |
ttaggtgactgcagtgacttcagatttttatgacagccgtatccgattttcatggtttcaatactaaaaatactttct------------------taga |
47179131 |
T |
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| Q |
101 |
gaaaaaattgttctcttatatactttggtatcaacagaaccaaaattggagatcattgttctttaaattccaacttggttctaacaaaaatcaattcaag |
200 |
Q |
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| T |
47179132 |
gaaaaaattgttctcttatatactttggtttcaacagaaccaaaattggagatcattgttctttaaattccaacttggttctaacaaaaatcaattcaag |
47179231 |
T |
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| Q |
201 |
ttaaatgaggtttagttgtttta-nnnnnnnactcaatttc-aaatatttttccaccaaaactcaacg-nnnnnnntaggttttataattaacgttttta |
297 |
Q |
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|||||||||||| |||||||||| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
47179232 |
ttaaatgaggttcagttgttttattttttttactcaatttcaaaatatttttccactaaaactcaacgaaaaaaaataggttttataattaacgttttta |
47179331 |
T |
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| Q |
298 |
ttttaacactaacacatcatcatca |
322 |
Q |
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| T |
47179332 |
ttttaacgctaacacatcatcatca |
47179356 |
T |
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