View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9660_low_19 (Length: 281)
Name: NF9660_low_19
Description: NF9660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9660_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 5374327 - 5374589
Alignment:
| Q |
1 |
atacacatacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctcgatgttatacct |
100 |
Q |
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| T |
5374327 |
atacacatacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctcgatgttatacct |
5374426 |
T |
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| Q |
101 |
gaactcagataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaacaaagtcaagtaa |
200 |
Q |
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| T |
5374427 |
gaactcagataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaacaaagtcaagtaa |
5374526 |
T |
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| Q |
201 |
tcattggtattcttgacactggtatatggccagagctaaaaagcttagatgacacaggactag |
263 |
Q |
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| T |
5374527 |
tcattggtattcttgacactggtatatggccagagctaaaaagcttagatgacacaggactag |
5374589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 47368240 - 47367987
Alignment:
| Q |
8 |
tacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctcgatgttatacctgaactca |
107 |
Q |
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| T |
47368240 |
tacaaacatgtagctcatggcttctccacaaggctaactactcaagaagcagacttactcacaaagcaaccgggaattctctcggttatccctgatgtca |
47368141 |
T |
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| Q |
108 |
gataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaacaaagtcaagtaatcattgg |
207 |
Q |
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| T |
47368140 |
gatacgagcttcacacaactcgaacaccagagttcctcggattggagaaaacaatcactcttttaccgtcctctggaaaacaaagtgaggtgattgttgg |
47368041 |
T |
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| Q |
208 |
tattcttgacactggtatatggccagagctaaaaagcttagatgacacaggact |
261 |
Q |
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| T |
47368040 |
agtaattgacacaggtgtatggcctgaactaaaaagcttcgatgacactggact |
47367987 |
T |
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