View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9660_low_26 (Length: 215)
Name: NF9660_low_26
Description: NF9660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9660_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 13473156 - 13472978
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcaaatggtaaacttccaaagaaatgattcctttgtaagcttaaaatttgtagatcttttaattcacttcc |
117 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| || ||||||||||| ||||| |
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| T |
13473156 |
agagttgaatgttttgtagataacaaagttcgaatggtaaacttccaaagaagtgattcctttgtaagcttaaaacttggagctcttttaattcgcttcc |
13473057 |
T |
|
| Q |
118 |
aatccaataagggatgagtccttctaatctattttctctcaaatccagcattaccaactttgtgcaattcattaaggag |
196 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||| |||||||| |||||||| || |||||||||||| |
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| T |
13473056 |
aatccaataagggatgagtccctttaatctattttctctcaaatctagcattactaactttgtacagttcattaaggag |
13472978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 14047315 - 14047439
Alignment:
| Q |
77 |
ctttgtaagcttaaaatttgtagatcttttaattcacttccaatccaataagggatgagtccttctaatctattttctctcaaatccagcattaccaact |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14047315 |
ctttgtaagcttaaaatttgtagatcttttaattcacttccaatccaataagggatgagtccttctaatctattttctctcaaatccagcattaccaact |
14047414 |
T |
|
| Q |
177 |
ttgtgcaattcattaaggaggaagg |
201 |
Q |
| |
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||||||| ||||||||||||||||| |
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| T |
14047415 |
ttgtgcagttcattaaggaggaagg |
14047439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 14025189 - 14025370
Alignment:
| Q |
20 |
agttgaatgttttgtagatggcaaagttcaaatggtaaacttccaaagaaatgattcctttgtaagcttaaaatttgtagatcttttaattcacttccaa |
119 |
Q |
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|||||||| |||||||||||||| ||||| ||||||||||||||| |||| ||||| |||||||||||||||| ||| | ||||||||||||||||||| |
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| T |
14025189 |
agttgaatcttttgtagatggcagagttccaatggtaaacttccatagaattgatttctttgtaagcttaaaacttgcaactcttttaattcacttccaa |
14025288 |
T |
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| Q |
120 |
tccaataagggatgagtccttctaatctattttctctcaaatccagcattaccaactttgtgcaattcattaaggaggaagg |
201 |
Q |
| |
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|||||||||||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||| |||| |
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| T |
14025289 |
tccaataagggatgtgtccttctaatctattgtctctcaaatcaagcattactaactttgtgcagttcattaaggagaaagg |
14025370 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 13875459 - 13875276
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcaaatggtaaacttccaaagaaatgattcctttgtaagcttaaaatttgtagatcttttaattcacttcc |
117 |
Q |
| |
|
||||||| ||||||||||| | ||||||||| | || |||||||||||||| |||||||||||||||||||||| ||| | ||||||||||||||||| |
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| T |
13875459 |
agagttggatgttttgtaggtagcaaagttcgagggggaaacttccaaagaagtgattcctttgtaagcttaaaacttgcaactcttttaattcacttcc |
13875360 |
T |
|
| Q |
118 |
aatccaataagggatgagtccttctaatctattttctctcaaatccagcattaccaactttgtgcaattcattaaggaggaagg |
201 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| |||| |
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| T |
13875359 |
aatccaataagggatcagtccttctaatccattttctctcaaatccagcattactaactttgtgcagttcattaaggagaaagg |
13875276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 14110382 - 14110565
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcaaatggtaaacttccaaagaaatgattcctttgtaagcttaaaatttgtagatcttttaattcacttcc |
117 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| |
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| T |
14110382 |
agagttgaatattttgtaaatggcaaagttcaaatggtaaacttccaaagaaatgattccttcgtaagcttaaaatttgcagatcttttaatttgcttcc |
14110481 |
T |
|
| Q |
118 |
aatccaataagggatgagtccttctaatctattttctctcaaatccagcattaccaactttgtgcaattcattaaggaggaagg |
201 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||||||||||||||| | |||||||| | ||||| |||||||||||| |||| |
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| T |
14110482 |
aatccagtaagggatgagtccatttaatctattttctctcaaatcaaacattaccatatcagtgcagttcattaaggagaaagg |
14110565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 13911729 - 13911912
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcaaatggtaaacttccaaagaaatgattcctttgtaagcttaaaatttgtagatcttttaattcacttcc |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||| ||||||||||||| ||| | ||||||||||| ||||| |
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| T |
13911729 |
agagttgaatgttttgtagatggcagagttcgaatggtaaatttccaaagaagtgattcctctgtaagcttaaaacttgcaactcttttaattcccttcc |
13911828 |
T |
|
| Q |
118 |
aatccaataagggatgagtccttctaatctattttctctcaaatccagcattaccaactttgtgcaattcattaaggaggaagg |
201 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||| ||||||| ||||||| |||||||||||| |||||||||||| |||| |
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| T |
13911829 |
aatccaataagggataagcccatctaatctattttctttcaaatctagcattatcaactttgtgcagttcattaaggagaaagg |
13911912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 13893163 - 13892980
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcaaatggtaaacttccaaagaaatgattcctttgtaagcttaaaatttgtagatcttttaattcacttcc |
117 |
Q |
| |
|
|||| |||||||||||||||| ||||||| |||||||||||||||||||| ||||| |||| ||||||||||| ||| || |||||||||| ||||| |
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| T |
13893163 |
agagctgaatgttttgtagataacaaagtttgaatggtaaacttccaaagaagtgattactttttaagcttaaaacttgcagctcttttaatttgcttcc |
13893064 |
T |
|
| Q |
118 |
aatccaataagggatgagtccttctaatctattttctctcaaatccagcattaccaactttgtgcaattcattaaggaggaagg |
201 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||| |||| |||||||||||| |||| |
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| T |
13893063 |
aatccaataagggacgggtccttctaatctattttctctcaaatcaagcattactaactttctgcagttcattaaggagaaagg |
13892980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 13862989 - 13862806
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcaaatggtaaacttccaaagaaatgattcctttgtaagcttaaaatttgtagatcttttaattcacttcc |
117 |
Q |
| |
|
|||||||||| ||| | |||| ||||||||| | |||||||||||| |||||||||||||| ||||||||||||| || || |||||||| || ||||| |
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| T |
13862989 |
agagttgaatatttcgaagatagcaaagttctactggtaaacttccgaagaaatgattcctatgtaagcttaaaacctgcagctcttttaactcgcttcc |
13862890 |
T |
|
| Q |
118 |
aatccaataagggatgagtccttctaatctattttctctcaaatccagcattaccaactttgtgcaattcattaaggaggaagg |
201 |
Q |
| |
|
||||||||||||||||| |||||||| ||| || ||||||| ||| |||||||| ||||||||||| ||||||||||||||||| |
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| T |
13862889 |
aatccaataagggatgactccttctagtctgttgtctctcatatcaagcattactaactttgtgcagttcattaaggaggaagg |
13862806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 14015056 - 14015239
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcaaatggtaaacttccaaagaaatgattcctttgtaagcttaaaatttgtagatcttttaattcacttcc |
117 |
Q |
| |
|
|||||| ||||||||||| || |||| |||||||||||||||||||||||| | |||| ||||||| ||||||| ||| | |||||||||| |||| |
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| T |
14015056 |
agagtttaatgttttgtatataacaaatttcaaatggtaaacttccaaagaagttattcttttgtaaacttaaaacttgcaaccgttttaattcaattcc |
14015155 |
T |
|
| Q |
118 |
aatccaataagggatgagtccttctaatctattttctctcaaatccagcattaccaactttgtgcaattcattaaggaggaagg |
201 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||| |||| |
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| T |
14015156 |
aatccaataagggatgagtccttgtaatctattttctcttaaatcaagcattactaactttgtgcagttcattaaggagaaagg |
14015239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 14084573 - 14084756
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcaaatggtaaacttccaaagaaatgattcctttgtaagcttaaaatttgtagatcttttaattcacttcc |
117 |
Q |
| |
|
|||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||||| ||| | ||||| ||||| ||||| |
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| T |
14084573 |
agagttgaattctttgaagaaagcaaagttcgaatgggaaacttccaaagaagtgattcctttgtaagcttaaaaattgcaactctttcaattcgcttcc |
14084672 |
T |
|
| Q |
118 |
aatccaataagggatgagtccttctaatctattttctctcaaatccagcattaccaactttgtgcaattcattaaggaggaagg |
201 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||| |||| |
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| T |
14084673 |
aatccaataagggacaagttcttctaatctattttctctaaaatcaagcattactaactttgtgcagttcattaaggagaaagg |
14084756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 13932258 - 13932437
Alignment:
| Q |
22 |
ttgaatgttttgtagatggcaaagttcaaatggtaaacttccaaagaaatgattcctttgtaagcttaaaatttgtagatcttttaattcacttccaatc |
121 |
Q |
| |
|
||||||| |||||||||||| ||||| |||||||||||||||||||| | ||||| || ||||||||||| ||| | ||||||||||| ||||||||| |
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| T |
13932258 |
ttgaatgaattgtagatggcagagttccaatggtaaacttccaaagaagtaattcccttttaagcttaaaacttgcaactcttttaattcgcttccaatc |
13932357 |
T |
|
| Q |
122 |
caataagggatgagtccttctaatctattttctctcaaatccagcattaccaactttgtgcaattcattaaggaggaagg |
201 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||| || |||||||| |||| |||||| |||||||||||| |||| |
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|
| T |
13932358 |
caataagggatgtgtccttctaatctattgtctctcatgtcaagcattactaactgtgtgcagttcattaaggagaaagg |
13932437 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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