View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9660_low_3 (Length: 531)
Name: NF9660_low_3
Description: NF9660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9660_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 14 - 531
Target Start/End: Original strand, 33709651 - 33710165
Alignment:
| Q |
14 |
ttaaccacttaggaaataagcagcttcaactcacaagtaaaaaactgattttgattaatacaagaaataaaattaannnnnnnctttattaattatttca |
113 |
Q |
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| T |
33709651 |
ttaaccacttaggaaataagcagcttcaactcacaagtaaaaaactgattttgattaatacaagaaataaaattaatttttttctttattaattatttca |
33709750 |
T |
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| Q |
114 |
atatgtataacatgcaaatgctaaaattagttctcatgcaggtatttcacctacgaaggttttcacagtttagaatttcaatttcaatatctagcttcta |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
33709751 |
atatgtataacatgcaaatgctaaaattagttctcatgcaggtatttcacctacgaaggttttcaaagtttagaaattcaatttcaatatctagcttcta |
33709850 |
T |
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| Q |
214 |
aattattcaaaacatattccaaatgcaatgcaaatatagacataactcataagacttgtaggtacttttggaattaaaaggaaaaggaaaaatgagcaag |
313 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
33709851 |
aattattcaaaacat---ccaaatgcaatgcaaatatagacataactcataagacttgtaggcagttttggaattaaaaggaaaaggaaaaatgagcaag |
33709947 |
T |
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| Q |
314 |
aattatatccaagatgagttacatacattaatttatagaagaattggtccttccctaattaatatgaaatgtaatttgtaagaactaaagaattccattc |
413 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33709948 |
aattatatccaagatgaattatatacattaatttatagaagaagtggtccttccctaattaatatgaaatgtaatttgtatgaactaaagaattccattc |
33710047 |
T |
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| Q |
414 |
tcttataatccggtggatggtgcatgtcattacttctcccatccttaaagcatattggaacataattggcctcatgaacactccccacaaacctacaaag |
513 |
Q |
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| T |
33710048 |
tcttataatccggtggatggtgcatgtcattacttctcccatccttaaagcatattggaacataattggcctcatgaacactccccacaaacctacaaag |
33710147 |
T |
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| Q |
514 |
gcaatcacccccaaactc |
531 |
Q |
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| T |
33710148 |
gcaatcacccccaaactc |
33710165 |
T |
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