View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9660_low_4 (Length: 526)
Name: NF9660_low_4
Description: NF9660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9660_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 42473476 - 42473985
Alignment:
| Q |
1 |
agagctgctgctgaggtaaaaagggacaatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatgttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473476 |
agagctgctgctgaggtaaaaagggacaatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatgttg |
42473575 |
T |
|
| Q |
101 |
gggataatattcgtgcttcagctgtttgcaagagatggtgttcagttgccacttctgtacgtgtactcgaccaatcaccttggcttatgtatttcccaaa |
200 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| |
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| T |
42473576 |
gggataatatccgtgcttcagctgtttgcaagagatggtgttcagttgccacttctgtacgtgtagtggaccaatcacctcggcttatgtatttcccaaa |
42473675 |
T |
|
| Q |
201 |
aattggtaattgttatgatttttatgaccctatgcagcgtaagactattcccttgagttgccagagttggatggatgtcgtgtttgctatgcaaaagatg |
300 |
Q |
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| T |
42473676 |
aattggtaatttttatgatttttatgaccctatgcagcgtaagactattcccttgagttgccagagttggatggatgtcgtgtttgctatgcaaaagatg |
42473775 |
T |
|
| Q |
301 |
gttggttattgctaaaccggcatgactggcggagtttggacagagattgcattttttctctctttaatccctttactagggatctgatcacgctgccaag |
400 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473776 |
gttggttattgctaaaccggcatgactagcggaggttggacagagatcgcattttttctctctttaatccctttactagggatctgatcacgctgccaag |
42473875 |
T |
|
| Q |
401 |
ctttaaaaggacataccgaaatgctgccttttcttgtgctccaacatcaactggatgtgttatattaattttcggacgtgttggttctagtgttctagct |
500 |
Q |
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| T |
42473876 |
ctttaaaaggacataccgaaatgctgccttttcttgtgctccaacatcaactggatgtgttatattaattttcggacgtgttggttctagtgttctagct |
42473975 |
T |
|
| Q |
501 |
ataagcatgt |
510 |
Q |
| |
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|||||||||| |
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| T |
42473976 |
ataagcatgt |
42473985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 507
Target Start/End: Original strand, 42479028 - 42479520
Alignment:
| Q |
16 |
gtaaaaagggacaatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatgttggggataatattcgtg |
115 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42479028 |
gtaaaaagtgacaatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatattggggataatattcgtg |
42479127 |
T |
|
| Q |
116 |
cttcagctgtttgcaagagatggtgttcagttgccacttctgtacgtgtactcgaccaatcaccttggcttatgtatttcccaaaaattggtaattgtta |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42479128 |
cttcagctgtttgcaagagatggtgttcagttgccacttctgtacgtgtactcgaccaatcaccttggcttatgtatttcccaaaaaagggtaattgtta |
42479227 |
T |
|
| Q |
216 |
tgatttttatgaccctatgcagcgtaaga-ctattcccttgagttgccagagttggatggatgtcgtgtttgctatgcaaaagatggttggttattgcta |
314 |
Q |
| |
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|||||| ||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42479228 |
tgatttctatgaccctgttcagcgtaagacctattcccttgagttgccagagttggatggatgtcgtgtttgctatacaaaagatggttggttattgcta |
42479327 |
T |
|
| Q |
315 |
aaccggcatgactggcggagtttggacagagattgcattttttctctctttaatccctttactagggatctgatcacgctgccaagctttaaaaggacat |
414 |
Q |
| |
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|||||||| ||||||||||| |||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| |
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| T |
42479328 |
aaccggcaggactggcggaggttggacggaaatcacattttctctctctttaatccctttactagggatctgatcacgctgccaaaatttgacaggacat |
42479427 |
T |
|
| Q |
415 |
accgaaatgctgccttttcttgtgctccaacatcaactggatgtgttatattaattttcggacgtgttggttctagtgttctagctataagca |
507 |
Q |
| |
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| | || ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
42479428 |
atcaaattgctgccttctcatgtgctccaacatcaactggatgtgttatattaattttcagacgtgttggttctagtcttgtagctataagca |
42479520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 28 - 321
Target Start/End: Complemental strand, 26047439 - 26047145
Alignment:
| Q |
28 |
aatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatgttggggataatattcgtgcttcagctgttt |
127 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| | || ||| || || | |||||||| | | | ||||||| | |||||||| ||||||| |
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| T |
26047439 |
aatttggagctgcaaacatgggctgatctccctgctgaactattagaaatgatcatatctcgtttagccttagaggataatgtccgtgcttctgctgttt |
26047340 |
T |
|
| Q |
128 |
gcaagagatggtgttcagttgccacttctgtacgtgtactcgaccaatcaccttggcttatgtatttcccaaaaattggtaattgttatgatttttatga |
227 |
Q |
| |
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||||||| ||| || ||||||| | ||||||| | | |||||||||| ||| | |||||||| || ||| ||||| | || ||||| || ||||| |
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| T |
26047339 |
gcaagagttggaattttgttgccaatgctgtacgcatggtgaaccaatcaccatggttgatgtattttccgaaatttggtcagtggtatgaattctatga |
26047240 |
T |
|
| Q |
228 |
ccctatgcagcgtaagac-tattcccttgagttgccagagttggatggatgtcgtgtttgctatgcaaaagatggttggttattgctaaaccggc |
321 |
Q |
| |
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|||| | ||||| ||||| |||||| ||||||| ||||||||| |||||| | | ||||| || ||||||||||||||||| ||||| |||||| |
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| T |
26047239 |
ccctgttcagcggaagacctattccattgagtttccagagttgaatggatctagagtttgttacacaaaagatggttggttactgctataccggc |
26047145 |
T |
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