View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9660_low_9 (Length: 418)
Name: NF9660_low_9
Description: NF9660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9660_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 3 - 418
Target Start/End: Original strand, 43702297 - 43702691
Alignment:
| Q |
3 |
atataatgtgtaacaaccttaacaaatcattgaagaccaacaaa---aatatggattgcattcaacatggtagacaaacatgcctaactaacaaaaccta |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
43702297 |
atataatgtgtaacaaccttaacaaatcattgaagaccaacatatttaatatggattgcattcaacatcatagacaaacatgactaactaacaaaaccta |
43702396 |
T |
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| Q |
100 |
aaatctcaatctccaannnnnnnnnnnnnnaaatcttcaaataattgagttaactaaaacaatctccaaataatcaagttaagaccgttggattaattaa |
199 |
Q |
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| T |
43702397 |
aaatctcaatctccaatttttttttt----aaatcttcaaataattgagttaactaaaacaatctccaaataatcaagttaagaccgttggattaattaa |
43702492 |
T |
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| Q |
200 |
cggccaggattcgttggggaatctgaattctgtgttgcaaccgcatcatgtaattccatacccccgcataacacaatgcaaaaagctaaaaactaagaag |
299 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43702493 |
cggccacgattcgttggggaatctgaattctgtgttgcaaccgcatcatgtaattccatacccccgcataacacaatgcaaaaagccaaa---------- |
43702582 |
T |
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| Q |
300 |
taatttatctgatcggaaacgacagcgtttgaagtacgcaagactccggcatcgattgtcggaaaattgaaaaaatggcgccggcgaagaagggaaaagc |
399 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43702583 |
----------gatcgaaaacgacagcgtttgaagtacgcaagtctccggcatcgatcgtcggaaaattgaaaaaatggcgccggcgaagaagggaaaagc |
43702672 |
T |
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