View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_high_18 (Length: 341)
Name: NF9661A_high_18
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 335
Target Start/End: Complemental strand, 1532061 - 1531740
Alignment:
| Q |
14 |
ttctcatgtcgcataccacaaacccgtatctatactggtaccgtgtagcagcccaaattacgaattatgtgactatgctatcaaccatggtggcagaatt |
113 |
Q |
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| T |
1532061 |
ttctcatgtcgcataccacaaacccgtatctatactggtaccgtgtagcagcccaaattacgaattatgtgactatgctatcaaccatggtggcagaatt |
1531962 |
T |
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| Q |
114 |
gagtcaatcttctttctgatatcattaggcagccaatctagaatttgattattccaatttccctttgcatcaaccaattccgctactaaatctaatcaag |
213 |
Q |
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| T |
1531961 |
gagtcaatcttctttctgatatcattaggcagccaatctagaatttgattattccaatttccctttgcatcaaccaattccgctactaaatctaatcaag |
1531862 |
T |
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| Q |
214 |
ttttataattaaaaagtttaaattaagtgaatccgttagcacttgtcacattaccactaaaaataaagccatcacaagctctaattgttaatatcaaaga |
313 |
Q |
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| T |
1531861 |
ttttataattaaaaaatttaaattaagtgaatccgttagcacttgtcacattaccactaaaaataaagccatcacaagctctaattgttaatatcaaaga |
1531762 |
T |
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| Q |
314 |
tgaaagatagtagagaaatatt |
335 |
Q |
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| T |
1531761 |
tgaaagatagtaaagaaatatt |
1531740 |
T |
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Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 26413617 - 26413522
Alignment:
| Q |
104 |
tggcagaattgagtcaatcttctttctgatatcattaggcagccaatctagaatttgattattccaatttccctttgcatcaaccaattccgctac |
199 |
Q |
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| T |
26413617 |
tggcagaattgagtcagtcttctttctgatatcattaggcaatcaatcgagcattcgattattccaatttccctttgtatcaaccaattccactac |
26413522 |
T |
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