View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_high_2 (Length: 575)

Name: NF9661A_high_2
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_high_2
NF9661A_high_2
[»] chr3 (4 HSPs)
chr3 (21-572)||(31141322-31141873)
chr3 (121-232)||(25889642-25889754)
chr3 (60-225)||(30046375-30046542)
chr3 (109-198)||(37133804-37133894)
[»] chr7 (6 HSPs)
chr7 (83-354)||(1716503-1716778)
chr7 (109-232)||(7961783-7961907)
chr7 (58-368)||(1345064-1345380)
chr7 (90-232)||(11269944-11270087)
chr7 (77-162)||(1103132-1103217)
chr7 (272-324)||(38969274-38969326)
[»] chr6 (13 HSPs)
chr6 (138-368)||(11681314-11681548)
chr6 (95-232)||(2921841-2921979)
chr6 (58-180)||(22880021-22880143)
chr6 (90-233)||(11678827-11678967)
chr6 (117-232)||(13556003-13556119)
chr6 (60-182)||(14721666-14721787)
chr6 (58-180)||(22898136-22898258)
chr6 (99-231)||(13557975-13558108)
chr6 (99-182)||(2923208-2923292)
chr6 (99-180)||(16403520-16403600)
chr6 (109-182)||(16910146-16910219)
chr6 (272-358)||(22258514-22258602)
chr6 (114-182)||(11677133-11677201)
[»] chr1 (7 HSPs)
chr1 (58-232)||(24284778-24284953)
chr1 (58-192)||(24272703-24272836)
chr1 (213-368)||(12466064-12466222)
chr1 (99-182)||(22827077-22827160)
chr1 (99-182)||(22840965-22841048)
chr1 (139-225)||(12458581-12458668)
chr1 (111-232)||(22826631-22826753)
[»] chr2 (6 HSPs)
chr2 (58-182)||(37965530-37965655)
chr2 (60-187)||(10128458-10128585)
chr2 (60-179)||(8761225-8761345)
chr2 (115-258)||(25550091-25550234)
chr2 (114-154)||(15140819-15140859)
chr2 (61-129)||(29905708-29905775)
[»] chr4 (9 HSPs)
chr4 (109-241)||(27272577-27272711)
chr4 (62-215)||(32015122-32015276)
chr4 (95-219)||(10395955-10396080)
chr4 (58-182)||(53469703-53469827)
chr4 (62-248)||(53472525-53472710)
chr4 (118-219)||(29235134-29235236)
chr4 (64-232)||(13816904-13817073)
chr4 (118-232)||(50887398-50887513)
chr4 (130-233)||(9010408-9010512)
[»] chr5 (4 HSPs)
chr5 (90-219)||(19670657-19670787)
chr5 (90-182)||(32795580-32795672)
chr5 (106-174)||(26896583-26896651)
chr5 (109-180)||(32796346-32796417)
[»] chr8 (2 HSPs)
chr8 (109-227)||(33897216-33897335)
chr8 (140-219)||(42001905-42001985)
[»] scaffold0007 (1 HSPs)
scaffold0007 (114-182)||(260215-260283)
[»] scaffold0065 (1 HSPs)
scaffold0065 (90-231)||(34682-34822)


Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 21 - 572
Target Start/End: Original strand, 31141322 - 31141873
Alignment:
Q  21 atcataagtgaaagaaatactccctatctatatttactttgttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31141322 atcataagtgaaagaaatactccctatctatatttactttgttgaaatataacttaaaatattgttagaaaaaagtctcacatcagagaataggaagaaa 31141421  T
Q  121 tatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagtttgctatagttggtattacctctactattt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||     
T  31141422 tatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttacaccaatagtaagtaagtttgctataattggtattacctctactattc 31141521  T
Q  221 aatatttgtaataattgattatggtgaaattcttttcatgactctgtctgcggattagtcaacacactgatggatactacgctaaatcttgtgtcgtttt 320  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| || | |||||||||| | |||||||||||||||    
T  31141522 aatatttgtaataattgattatggtggaattcttttcatgactctatctgtggattagtcaacacattgctcgatactacgccatatcttgtgtcgtttt 31141621  T
Q  321 tattttatcctactattattatcattattctcgcgtcccgttgtaacatacttttatataaccttttgcatggggcatcaaggaagatggtgaaatgccc 420  Q
     ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31141622 gattttgtcctactattattatcattattctcgcttcccgttgtaacatacttttatataaccttttgcatggggcatcaaggaagatggtgaaatgccc 31141721  T
Q  421 atttgttatatatacgatcaagagcatatcatacaagagtgataagagggaactttattagttgaagcatgaatatctttcctaacattttgaaatatgc 520  Q
    ||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31141722 atttgttatctatacgatcaagagcataccgtacaagagtgataagagagaactttattagttgaagcatgaatatctttcctaacattttgaaatatgt 31141821  T
Q  521 ctttgtttctgttccgccaaatctctcagaatgttacaataaaaagtagtca 572  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31141822 ctttgtttctgttccgccaaatctatcagaatgttacaataaaaagtagtca 31141873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 25889642 - 25889754
Alignment:
Q  121 tatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctactatt 219  Q
    ||||||||| ||| | |||||||||||||||||||  ||||||||||||||||||||||||| |||  | |||||||||| | | | |||||||| ||||    
T  25889642 tatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcaccaatagttagtgggttttgctatagctagcagtacctctattatt 25889741  T
Q  220 taatatttgtaat 232  Q
    || | ||||||||    
T  25889742 tagtctttgtaat 25889754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 30046375 - 30046542
Alignment:
Q  60 tgttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaa--tatgcaaagatttagccatataaataaaagtcttgcg 157  Q
    |||||||||||| ||| ||||| |||| | |||| |||||| ||| || |||| ||| |||  |||||||||| ||  |||||||||||||||  ||| |    
T  30046375 tgttgaaatatgccttgaattaatgttgggaaaatgtctcatatcggataatatgaaaaaaaatatgcaaagacttgaccatataaataaaagctttgtg 30046474  T
Q  158 tgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctactatttaatat 225  Q
    ||||||||||||||| | ||||||| |||  | |||||||||| | |  |||||||||||||| |||||    
T  30046475 tgttagtatttcttgta-caatagttagtcggttttgctatagctagcgttacctctactattcaatat 30046542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 37133894 - 37133804
Alignment:
Q  109 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagt-aagtttgctata 198  Q
    |||| ||| |||||| | ||||||||||| ||| ||||||||||||| || |||||||||||| || ||||||| ||| || |||||||||    
T  37133894 aatatgaaaaaatatacgaagatttagccgtatgaataaaagtcttgtgtattagtatttcttacatcaatagttagtgaattttgctata 37133804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 83 - 354
Target Start/End: Complemental strand, 1716778 - 1716503
Alignment:
Q  83 tgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 182  Q
    |||| ||||||| |||||||||  |||||| ||| ||||||| ||||| ||  ||||||||||||| |||||| |||||| ||||||||||| |||||||    
T  1716778 tgttggaaaaaattctcacatcgaagaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgcatcaatagt 1716679  T
Q  183 aagtaag-tttgctatagttggtattacctctactatttaatatttgtaataattgattatggtgaaattcttttc-atgactctgtctgcggattagtc 280  Q
     ||| || |||  ||||| ||||||||||||||||||| | ||| | | ||||| |||||| ||| |||||||||| || |||||  | |   |||||||    
T  1716678 tagtgagtttttttatagctggtattacctctactattcagtatatatgataatcgattatagtggaattcttttcaataactctacccgaaaattagtc 1716579  T
Q  281 aacacactgatggatactacgctaaatcttgtgtcgtttttattttatc--ctactattattatcattattctcgc 354  Q
    |||||| || ||||||||||| |||||||| |||| |||||||| | ||   |||||||||| |||||||||||||    
T  1716578 aacacattgttggatactacgttaaatcttatgtcatttttattctgtcttttactattattgtcattattctcgc 1716503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 109 - 232
Target Start/End: Original strand, 7961783 - 7961907
Alignment:
Q  109 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtatt 207  Q
    |||| |||||||||||||||| ||| | |||||||||||||| |||| |||||||||||||||||||||||||| |||  | |||||||||| | | |||    
T  7961783 aatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttttgctatagctagcatt 7961882  T
Q  208 acctctactatttaatatttgtaat 232  Q
    || ||||||||| || |||||||||    
T  7961883 acttctactattcaaaatttgtaat 7961907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 368
Target Start/End: Original strand, 1345064 - 1345380
Alignment:
Q  58 tttgttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcg 157  Q
    |||||||||||||| ||| ||||| |||||| |||||||||||||||  |||||| |||||||||||  |||| ||   ||||||||||||  ||||| |    
T  1345064 tttgttgaaatatgtcttgaattagtgttag-aaaaagtctcacatcgaagaataagaagaaatatg-taagacttgatcatataaataaagatcttgtg 1345161  T
Q  158 tgttagtatttcttgcaccaatagtaagta-------agt-ttgctatagttggtattacctctactatttaatatttgtaataattgattatggtgaaa 249  Q
    |||||||||||    |||||||||| | ||       ||| ||||||| | || |||||| ||||||||| | ||| |||||| || |||||| ||| ||    
T  1345162 tgttagtattt----caccaatagttaatagttaacgagtcttgctattgctgatattacttctactattcagtatatgtaatcatcgattatagtgtaa 1345257  T
Q  250 ttcttttc-atgactctgtctgcggattagtcaacacactgatggatactacgctaaatcttgtgtcg-tttttattttatc--ctactattattatcat 345  Q
    || ||||| |||||||||  ||  ||||||| |  |   || ||||||||||| | |||||||||||| |||||||| ||||   |||||||||||||||    
T  1345258 tttttttcaatgactctgcatgtagattagtaagaatgttgttggatactacgttcaatcttgtgtcgttttttattctatcttttactattattatcat 1345357  T
Q  346 tattctcgcgtcccgttgtaaca 368  Q
    ||||||  | ||||||| |||||    
T  1345358 tattcttacatcccgttataaca 1345380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 11269944 - 11270087
Alignment:
Q  90 aaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag 189  Q
    |||| ||| |||||| || |||| ||||||||||  |||  ||| | |||||||||||||| |||| |||||||||||  ||||||||||||| |||  |    
T  11269944 aaaatgtcccacatcggataatatgaagaaatataaaaaagtttggtcatataaataaaagccttgtgtgttagtattagttgcaccaatagttagtggg 11270043  T
Q  190 -tttgctatagttggtattacctctactatttaatatttgtaat 232  Q
     |||||||||  | || |||||||||||||| | ||||||||||    
T  11270044 ttttgctataactagtgttacctctactattcagtatttgtaat 11270087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 1103132 - 1103217
Alignment:
Q  77 aattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgtta 162  Q
    ||||| |||| |||||| ||| |||||| || |||| ||||||||||| ||||| || |||||||||||||||| |||| ||||||    
T  1103132 aattagtgttggaaaaacgtcccacatcggataatatgaagaaatatgtaaagacttggccatataaataaaagccttgtgtgtta 1103217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 38969326 - 38969274
Alignment:
Q  272 ggattagtcaacacactgatggatactacgctaaatcttgtgtcgtttttatt 324  Q
    |||||||||| ||||  | ||||||| ||| ||||||||||||||||||||||    
T  38969326 ggattagtcagcacatggctggataccacgttaaatcttgtgtcgtttttatt 38969274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 138 - 368
Target Start/End: Complemental strand, 11681548 - 11681314
Alignment:
Q  138 atataaataaaagtcttgcgtgttagta-tttcttgcaccaatagtaagtaagtttgctatagttggtattacctctactatttaatatttgtaataatt 236  Q
    |||||||||||||| ||| ||||||||| ||||||||| ||||||| |||   ||| ||||||  |||||||||| ||||||| | ||| |||||| |||    
T  11681548 atataaataaaagttttgtgtgttagtaatttcttgcaacaatagttagtggttttactatagcaggtattacctatactattcagtatatgtaatcatt 11681449  T
Q  237 gattatggtgaaattcttttcat-gactctgtctgcggattagtcaacacactgatggatactacgctaaatcttgtgtcgtttttattttatc--ctac 333  Q
    |||||| ||| |||| ||||||  | || ||   | |||||||||| |||| ||||| |||| ||| |||||||||||||||||||  ||| ||   |||    
T  11681448 gattatagtggaatttttttcagcggctttgctcgtggattagtcagcacattgatgcataccacgttaaatcttgtgtcgtttttcatttgtcttttac 11681349  T
Q  334 tattattatcattattctcgcgtcccgttgtaaca 368  Q
    |||||||||||||||| |||||||||||| |||||    
T  11681348 tattattatcattattatcgcgtcccgttataaca 11681314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 2921979 - 2921841
Alignment:
Q  95 gtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttg 193  Q
    |||||||||| || |||| |||||||||||||| || || |  |||||||||||||||||  |||||||||||||||||||||||||| |||  | ||||    
T  2921979 gtctcacatcggataatatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcaccaatagttagtgggttttg 2921880  T
Q  194 ctatagttggtattacctctactatttaatatttgtaat 232  Q
    |||||| | | ||||| |||| |||| || |||||||||    
T  2921879 ctatagctagcattacgtctaatattcaaaatttgtaat 2921841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 22880143 - 22880021
Alignment:
Q  58 tttgttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcg 157  Q
    ||||||||||| |  ||| ||||| |||| |||||||||| |||| |||||||||| |||||||||  ||| | || | |||||||||||| || ||| |    
T  22880143 tttgttgaaatttaccttgaattagtgttggaaaaaagtcacacaacagagaatagaaagaaatatataaatacttggtcatataaataaaggttttgtg 22880044  T
Q  158 tgttagtatttcttgcaccaata 180  Q
    ||||| |||||||||||||||||    
T  22880043 tgttaatatttcttgcaccaata 22880021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 11678827 - 11678967
Alignment:
Q  90 aaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag 189  Q
    |||| ||| |||||| || |||| ||||||||||||||||  || | ||| ||||||||| ||||| ||||||||||||||  ||||||||||     |     
T  11678827 aaaatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttctaacaccaatagt---ggat 11678923  T
Q  190 tttgctatagttggtattacctctactatttaatatttgtaata 233  Q
    |||||||||||| | ||||||||||||||| | |||||||||||    
T  11678924 tttgctatagttagcattacctctactattcagtatttgtaata 11678967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 13556119 - 13556003
Alignment:
Q  117 gaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctac 215  Q
    |||||||||||||  || | |||||||||||||| |||| |||||||||||||||||||||||||| | |  | |||||||||| | | ||||| |||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttactgggttttgctatagctagcattacttctac 13556020  T
Q  216 tatttaatatttgtaat 232  Q
    |||| || |||||||||    
T  13556019 tattcaaaatttgtaat 13556003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 14721666 - 14721787
Alignment:
Q  60 tgttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtg 159  Q
    |||||| ||||| | | ||||| |||| | |||| ||| |||||| |||||||| ||||||||||||||||||| ||| |||||||||||| ||||  |     
T  14721666 tgttgacatatgccatgaattaatgttgggaaaatgtcccacatcggagaatagaaagaaatatgcaaagatttggcc-tataaataaaagccttgttta 14721764  T
Q  160 ttagtatttcttgcaccaatagt 182  Q
    | ||||||||||||| |||||||    
T  14721765 taagtatttcttgcagcaatagt 14721787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 22898258 - 22898136
Alignment:
Q  58 tttgttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcg 157  Q
    ||||||||||| |  ||| ||||| |||| |||||||||| |||| |||||||||| |||||||||  ||| | || | |||||||||||| || ||  |    
T  22898258 tttgttgaaatttaccttgaattagtgttggaaaaaagtcacacaacagagaatagaaagaaatatataaatacttggtcatataaataaaggttttttg 22898159  T
Q  158 tgttagtatttcttgcaccaata 180  Q
    ||||| |||||||||||||||||    
T  22898158 tgttaatatttcttgcaccaata 22898136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 13558108 - 13557975
Alignment:
Q  99 cacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagt-aagtttgctat 197  Q
    |||||| || |||| ||||||||||||||||  || | ||||||||||||||  ||| ||||||||||||| |||||||||||| |||  | ||||||||    
T  13558108 cacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcaccaatagttagtggattttgctat 13558009  T
Q  198 agttggtattacctctactatttaatatttgtaa 231  Q
     | | | ||||| ||||||||| || ||||||||    
T  13558008 tgctagcattacttctactattcaaaatttgtaa 13557975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 2923292 - 2923208
Alignment:
Q  99 cacatcagagaataggaagaaatatgcaaa-gatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 182  Q
    |||||| || |||| ||||||||||||||| |  || | ||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  2923292 cacatcggataatatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcactaatagt 2923208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 16403520 - 16403600
Alignment:
Q  99 cacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaata 180  Q
    ||||||||  |||| |||||||||||||| || |||| ||||||||||||||||||| |||||  ||||  |||||||||||    
T  16403520 cacatcaggtaatatgaagaaatatgcaa-gacttagtcatataaataaaagtcttgtgtgtttatattatttgcaccaata 16403600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 16910219 - 16910146
Alignment:
Q  109 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 182  Q
    |||| |||| |||||||||||| || ||  ||||||||||||| ||| |||||||||||| |||| ||||||||    
T  16910219 aatatgaaggaatatgcaaagacttggcattataaataaaagtattgtgtgttagtatttgttgcgccaatagt 16910146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 272 - 358
Target Start/End: Original strand, 22258514 - 22258602
Alignment:
Q  272 ggattagtcaacacactgatggatactacgctaaatcttgtgtcgtttttattttatc--ctactattattatcattattctcgcgtcc 358  Q
    ||||||||||||||| || ||||||| ||| | ||| |||||||||||| ||| | ||   |||||||||| |||||||||||||||||    
T  22258514 ggattagtcaacacattgctggataccacgtttaatgttgtgtcgttttcattatgtcttttactattattgtcattattctcgcgtcc 22258602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 11677133 - 11677201
Alignment:
Q  114 gaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 182  Q
    ||||||||||||||||  ||   ||||||||||||| ||||| ||||||||||||||  ||||||||||    
T  11677133 gaagaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttctaacaccaatagt 11677201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 58 - 232
Target Start/End: Original strand, 24284778 - 24284953
Alignment:
Q  58 tttgttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcg 157  Q
    |||||||||||||| ||| ||||| | || | |||||||| |||||||||||||| ||| ||||||||||| |||| || ||||||||||| |  ||| |    
T  24284778 tttgttgaaatatgccttgaattaatattgggaaaaagtcccacatcagagaatatgaacaaatatgcaaatatttggctatataaataaaggcattgtg 24284877  T
Q  158 tgttagtatttcttgcaccaatagtaagt-aagtttgctatagttggtattacctctactatttaatatttgtaat 232  Q
    ||||| ||||||||||||||||||| |||  |  || |||||| |||||||| |||||||||||| ||| ||||||    
T  24284878 tgttaatatttcttgcaccaatagtcagtggatgttactatagctggtattagctctactatttagtatctgtaat 24284953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 192
Target Start/End: Original strand, 24272703 - 24272836
Alignment:
Q  58 tttgttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcg 157  Q
    |||||||||||||| ||| ||||| |||| ||||||| |||||||||  ||| || ||||||||||||||||| ||  | ||||| ||||| | |||| |    
T  24272703 tttgttgaaatatgtcttgaattagtgttggaaaaaa-tctcacatcgtagagtatgaagaaatatgcaaagacttgacaatatatataaaggccttgtg 24272801  T
Q  158 tgttagtatttcttgcaccaatagtaagtaagttt 192  Q
    ||||||||||||||||||||||||| ||| |||||    
T  24272802 tgttagtatttcttgcaccaatagttagtgagttt 24272836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 213 - 368
Target Start/End: Original strand, 12466064 - 12466222
Alignment:
Q  213 tactatttaatatttgtaataattgattatggtgaaattcttttca-tgactctgtctgcggattagtcaacacactgatggatactacgctaaatcttg 311  Q
    ||||||| ||||||| |||| ||| ||||| ||| ||||||||||| || ||||| | | | |||||||| |||| |||||||||| ||| | |||||||    
T  12466064 tactattcaatatttataatcattaattatagtggaattcttttcaatggctctgcccgtgaattagtcagcacattgatggataccacgtttaatcttg 12466163  T
Q  312 tgtcgtttttattttatcct--actattattatcattattctcgcgtcccgttgtaaca 368  Q
    || |||||| ||| | || |  ||||||||  ||||||||||||||||||||| |||||    
T  12466164 tgccgttttcattatgtcttttactattatagtcattattctcgcgtcccgttataaca 12466222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 22827160 - 22827077
Alignment:
Q  99 cacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 182  Q
    |||||| || |||| |||||||||||||||| ||| | |||||||||||||| |||| |||||  |||||||||||||||||||    
T  22827160 cacatcggataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcaccaatagt 22827077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 22840965 - 22841048
Alignment:
Q  99 cacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 182  Q
    |||||| || |||| ||||||||||||||||  || | |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  22840965 cacatcggataatatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcaccaatagt 22841048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 12458581 - 12458668
Alignment:
Q  139 tataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctactatttaatat 225  Q
    ||||||||||   |||| |||||||||||||||| ||||||||| |||| | ||||||| || ||||||||||||||||||| |||||    
T  12458581 tataaataaagaccttgtgtgttagtatttcttgtaccaatagttagtaggatttgctagagctggtattacctctactattcaatat 12458668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 22826753 - 22826631
Alignment:
Q  111 taggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagt-aagtttgctatagttggtattac 209  Q
    |||||| |||| |||||||  || | |||||||||||||| |||  |||||||||||||||||||||||||| |||  | |||||||||| | | |||||    
T  22826753 taggaaaaaatctgcaaaggcttggtcatataaataaaagccttatgtgttagtatttcttgcaccaatagttagtggattttgctatagctagcattac 22826654  T
Q  210 ctctactatttaatatttgtaat 232  Q
     ||||||||| || |||| ||||    
T  22826653 ttctactattcaaaatttttaat 22826631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 37965655 - 37965530
Alignment:
Q  58 tttgttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtc-ttgc 156  Q
    |||||||||||||| ||| ||||| |||| | |||| |||||||||| || |||| ||||||||||||||||| || |  ||||||||||||||| |||     
T  37965655 tttgttgaaatatgccttgaattagtgttgggaaaatgtctcacatcggataatatgaagaaatatgcaaagacttggatatataaataaaagtctttgt 37965556  T
Q  157 gtgttagtatttcttgcaccaatagt 182  Q
    ||||||||||||||||||||||||||    
T  37965555 gtgttagtatttcttgcaccaatagt 37965530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 10128458 - 10128585
Alignment:
Q  60 tgttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtg 159  Q
    |||||||||||| | | ||||| |||| ||||||  |  |||||| ||||||| ||||||||||| ||||| || | ||||||||||||||||||| |||    
T  10128458 tgttgaaatatgtcctgaattagtgttggaaaaatattccacatcggagaatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtg 10128557  T
Q  160 ttagtatttcttgcaccaatagtaagta 187  Q
    ||||||||||||||||||||||| ||||    
T  10128558 ttagtatttcttgcaccaatagttagta 10128585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 8761345 - 8761225
Alignment:
Q  60 tgttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaaga-tttagccatataaataaaagtcttgcgt 158  Q
    |||||||||||| ||| ||||  |||| | |||| ||| ||||||||| |||| ||||||||||||||| | ||| | ||||||||||||||||||| ||    
T  8761345 tgttgaaatatgtcttgaatttgtgttgggaaaatgtcccacatcagataatatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgt 8761246  T
Q  159 gttagtatttcttgcaccaat 179  Q
    |||||||||||||||||||||    
T  8761245 gttagtatttcttgcaccaat 8761225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 258
Target Start/End: Original strand, 25550091 - 25550234
Alignment:
Q  115 aagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagt-aagtttgctatagttggtattacctct 213  Q
    |||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||||| || |||||| |||  | ||| |||||| |||  |||||| |    
T  25550091 aagaaatatgtaaagatttggccatataaataaaagtcttgtgtg-tagtatttcttggactaatagttagtggattttcctatagctggagttaccttt 25550189  T
Q  214 actatttaatatttgtaataattgattatggtgaaattcttttca 258  Q
    |||||| | ||| |||||| || |||||| ||  |||||||||||    
T  25550190 actattcagtatctgtaattatcgattatagtagaattcttttca 25550234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 15140819 - 15140859
Alignment:
Q  114 gaagaaatatgcaaagatttagccatataaataaaagtctt 154  Q
    ||||||||||| |||||||| | ||||||||||||||||||    
T  15140819 gaagaaatatgtaaagatttggtcatataaataaaagtctt 15140859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 29905775 - 29905708
Alignment:
Q  61 gttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaag 129  Q
    ||||||||||  ||| ||||| ||| || |||||||||||||| |||||||| |||| |||||||||||    
T  29905775 gttgaaatataccttgaattagtgtaaggaaaaagtctcacataagagaataagaag-aatatgcaaag 29905708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 27272577 - 27272711
Alignment:
Q  109 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag--tttgctatagttggtat 206  Q
    |||| |||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||||| |||  |  |||||||||| | | ||    
T  27272577 aatatgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagtgggtttttgctatagctagcat 27272676  T
Q  207 tacctctactatttaatatttgtaataattgatta 241  Q
    ||| ||||||||| || ||||||||| ||| ||||    
T  27272677 tacttctactattcaaaatttgtaattattaatta 27272711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 62 - 215
Target Start/End: Original strand, 32015122 - 32015276
Alignment:
Q  62 ttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgtt 161  Q
    |||||||||| ||| ||||| ||||  ||||||||||||||| | | |||||||||| ||||||||||| || || | ||||||||| || ||| |||||    
T  32015122 ttgaaatatgtcttgaattagtgttgtaaaaaagtctcacataaaataataggaagatatatgcaaagacttggcaacataaataaaggttttgtgtgtt 32015221  T
Q  162 agtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctac 215  Q
    ||||||||||||||||||||| |||  | |||||||||| || |||||| |||||    
T  32015222 agtatttcttgcaccaatagttagtgggttttgctatagctgatattacatctac 32015276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 95 - 219
Target Start/End: Original strand, 10395955 - 10396080
Alignment:
Q  95 gtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagtt-tg 193  Q
    |||||||||||||||| | ||||||||||||||||| |  |||||||||||||||| |||| |||||||||||||||||| ||||||| |||  ||| ||    
T  10395955 gtctcacatcagagaagatgaagaaatatgcaaagactcggccatataaataaaagccttgtgtgttagtatttcttgcatcaatagttagtgggttatg 10396054  T
Q  194 ctatagttggtattacctctactatt 219  Q
    |||||| |||| || | |||||||||    
T  10396055 ctatagatggtgttccttctactatt 10396080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 53469827 - 53469703
Alignment:
Q  58 tttgttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcg 157  Q
    |||||||||||||| ||| ||||| |||| | |||| ||   |||||||| |||| ||||||||||||||||| || | ||||||||||||||||||| |    
T  53469827 tttgttgaaatatgcctttaattaatgttgggaaaatgttctacatcagataatatgaagaaatatgcaaagacttggtcatataaataaaagtcttgtg 53469728  T
Q  158 tgttagtatttcttgcaccaatagt 182  Q
    ||||||||||||||| | |||||||    
T  53469727 tgttagtatttcttgaatcaatagt 53469703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 62 - 248
Target Start/End: Complemental strand, 53472710 - 53472525
Alignment:
Q  62 ttgaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgtt 161  Q
    |||||||||| ||| ||||| |||| | |||| ||  |||||| || |||| ||||||||||||||||| || ||||||||||||||||| ||| |||||    
T  53472710 ttgaaatatgccttgaattagtgttgggaaaatgttccacatcggataatacgaagaaatatgcaaagactt-gccatataaataaaagt-ttgtgtgtt 53472613  T
Q  162 agtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctactatttaatatttgtaataattgattatggtgaa 248  Q
    |||||||| ||||||||| || |||  | |||||||||| | |  |||||||||||||| | ||| |||||| || |||||| |||||    
T  53472612 agtatttcatgcaccaatggttagtgggttttgctatagctagcgttacctctactattcagtatctgtaattatcgattatagtgaa 53472525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 29235236 - 29235134
Alignment:
Q  118 aaatatgcaaagatttagccatataaataaaagtcttgcgtgttagt-atttcttgcaccaatagtaagtaagtttgctatagttggtattacctctact 216  Q
    ||||||||||||| || |||||||||||||| | |||| |||||||| ||||||||||||||||||  ||   |||||||||||||||||||| ||||||    
T  29235236 aaatatgcaaagacttggccatataaataaaggccttgtgtgttagtaatttcttgcaccaatagttcgtggttttgctatagttggtattacatctact 29235137  T
Q  217 att 219  Q
    |||    
T  29235136 att 29235134  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 232
Target Start/End: Original strand, 13816904 - 13817073
Alignment:
Q  64 gaaatatgacttaaattattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttag 163  Q
    ||||||||  || ||||| |||| | |||||||||||||||  |||||| |||||||||||| |||| || | ||||||||||||   |||  ||||||     
T  13816904 gaaatatgcattgaattaatgttgggaaaaagtctcacatcgaagaatatgaagaaatatgcgaagacttggtcatataaataaagaccttatgtgttat 13817003  T
Q  164 tatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctactatttaatatttgtaat 232  Q
    ||||||||| || |||||| ||| || ||||| |||| | ||||| || || ||||| | ||||||||||    
T  13817004 tatttcttgtacaaatagttagtgagttttgcgatagctagtattgccactgctattcagtatttgtaat 13817073  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 50887513 - 50887398
Alignment:
Q  118 aaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagttt-gctatagttggtattacctctact 216  Q
    ||||||||||||  || |||||||||||||| |||||| | ||| || || ||| ||| |||||| |||  |||| ||||||| | ||||||||||||||    
T  50887513 aaatatgcaaaggcttggccatataaataaatgtcttgtgcgttggttttgcttacactaatagttagtgggttttgctatagctagtattacctctact 50887414  T
Q  217 atttaatatttgtaat 232  Q
    ||||| ||| ||||||    
T  50887413 atttagtatatgtaat 50887398  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 9010512 - 9010408
Alignment:
Q  130 atttagccatataaataaaagtcttgcgtgttagta-tttcttgcaccaatagtaagta-agtttgctatagttggtattacctctactatttaatattt 227  Q
    |||||||| ||||||||||   |||| ||||||||| |||| |||||||||||| |||  | |||| ||||||||||||||||||||  ||| | |||||    
T  9010512 atttagcc-tataaataaagaccttgtgtgttagtaatttcgtgcaccaatagttagtggattttgatatagttggtattacctctagaattcagtattt 9010414  T
Q  228 gtaata 233  Q
    ||||||    
T  9010413 gtaata 9010408  T

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Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 19670657 - 19670787
Alignment:
Q  90 aaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag 189  Q
    |||| ||||||||| ||| |||| ||||||||||||||||  |||| |||||||||||||| |||| ||||||||||| |||| ||||||||| |||  |    
T  19670657 aaaatgtctcacataagataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtaccaatagttagtggg 19670756  T
Q  190 -tttgctatagttggtattacctctactatt 219  Q
     |||||||||| | |  ||||||||||||||    
T  19670757 ttttgctatagctagcgttacctctactatt 19670787  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 32795672 - 32795580
Alignment:
Q  90 aaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 182  Q
    |||| ||| |||||| || |||| ||||||||||||||||| |||| ||||| |||||||||||||||||| |||||| |||| |||||||||    
T  32795672 aaaatgtcccacatcggataatatgaagaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgtaccaatagt 32795580  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 26896583 - 26896651
Alignment:
Q  106 gagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgca 174  Q
    ||||||||||||||||||||||||| || ||||||||||||||    ||| ||||||||||||||||||    
T  26896583 gagaataggaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgca 26896651  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 32796417 - 32796346
Alignment:
Q  109 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaata 180  Q
    |||| ||||||||||||||||  |||| |||||||||||||| |||| ||||||||||| ||||||| ||||    
T  32796417 aatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattccttgcacaaata 32796346  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 33897216 - 33897335
Alignment:
Q  109 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtatt 207  Q
    |||||||||||||||| ||||||||  | |||||||||||||||||| |||||||||||| || |||||||| | |||| | |||| |||||||  ||||    
T  33897216 aataggaagaaatatgtaaagatttgacaatataaataaaagtcttgtgtgttagtattttttacaccaataattagtaggttttgttatagtttatatt 33897315  T
Q  208 acctctactatttaatattt 227  Q
    | ||| |||||| |||||||    
T  33897316 atctccactattcaatattt 33897335  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 42001905 - 42001985
Alignment:
Q  140 ataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctactatt 219  Q
    |||||||||||||||| ||||||||| | |||||||||||||| |||| | |||||||||| | | ||||| |||||||||    
T  42001905 ataaataaaagtcttgtgtgttagtaatacttgcaccaatagttagtaggttttgctataggtagcattacttctactatt 42001985  T

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Target: scaffold0007 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 260283 - 260215
Alignment:
Q  114 gaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 182  Q
    ||||||||||||||||| |||| || ||||||||||  |||| ||||||||||||||||||||||||||    
T  260283 gaagaaatatgcaaagacttagtcaaataaataaaatccttgtgtgttagtatttcttgcaccaatagt 260215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 34682 - 34822
Alignment:
Q  90 aaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag 189  Q
    |||| ||||||||| ||| ||||  || ||||||| |||   |||| ||||||||||||||||||  |||||||||||  | ||||||||||| |||  |    
T  34682 aaaatgtctcacattagataatataaaaaaatatgaaaatgcttagtcatataaataaaagtctt--gtgttagtattattagcaccaatagttagtggg 34779  T
Q  190 -tttgctatagttggtattacctctactatttaatatttgtaa 231  Q
     |||||||||| |  |||||| ||||||||||| |||||||||    
T  34780 ttttgctatagctaatattacttctactatttagtatttgtaa 34822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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