View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_high_33 (Length: 268)
Name: NF9661A_high_33
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 43104524 - 43104638
Alignment:
| Q |
125 |
taaaatatagatctataattcataatataaagcataattatctacaaggtgatttaa--taggttttctttaaggaaagtgatttaatagataaatatga |
222 |
Q |
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| T |
43104524 |
taaaatatagatctataattcataatataaagcataattatctacaaggtgatttaaaataggttttctttaaggaaagtgatttaatagataaatatga |
43104623 |
T |
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| Q |
223 |
atataatagtattat |
237 |
Q |
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| T |
43104624 |
atataatagtattat |
43104638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 43104477 - 43104531
Alignment:
| Q |
47 |
aggcatgccacgttcattagtcatcaacaatatatagaaacggtgaataaaatat |
101 |
Q |
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| T |
43104477 |
aggcatgccacgttcattagtcatcaacaatatatagaaacggtgagtaaaatat |
43104531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 32188157 - 32188185
Alignment:
| Q |
104 |
ggcatcggttagcatttcccataaaatat |
132 |
Q |
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| T |
32188157 |
ggcatcggttagcatttcccataaaatat |
32188185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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